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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ALHPHEKLNNWGKWGDDDQRGAANYITPERIVAAARLIQTGKTFSLAIPIDSNGPVFPPRLPPHHTMEITGADYVADPGA
SPSPIRFADDYIYMPLQGSTQWDALSHGWYGESLYNGVPEAAIRSSGAGGATKLGIENVKTSFLGRGVLVDIVRFKGGSL
PEGYTITRADLEGALAKQKSKLLPGDILVIRTGLVESWYDLDPVGRASFFLNPMTGIGSDTVPWIHEQRLAGVAADNIAL
ERVPHLALPVHGNLLRDLGVYIGEIWWLEELAKDCAQDGRYEFFLAAQPLYIPGAVGSPLNPIAVK

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ibz:B 308 309 0.9967 0.9903 0.9871 0.0 5ibz:A, 5ibz:C, 5ibz:D
2 6ohr:A 576 89 0.0784 0.0417 0.2697 0.69 6ohr:B, 6ohr:C, 6ohr:D, 6ohr:E, 6u8z:A
3 7vno:A 452 68 0.0621 0.0420 0.2794 1.8 7vno:B, 7vnt:A, 7vnt:B, 7vo1:A, 7vo1:B
4 4eez:B 342 91 0.0817 0.0731 0.2747 2.9 4eex:A, 4eex:B, 4eez:A
5 8hmo:A 205 134 0.1078 0.1610 0.2463 5.9 8hmo:B, 8hmo:C, 8hmo:D, 8hmo:E, 8hmo:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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