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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ALHFLDINATEVKKYPTAIQDIIINRSFDGMIIRGVFPRDTMEQVARCLEEGNDGGMKSILNKNEEFGTKVAQIYGHAIV
GQSPDLKDYFASSAIFRQACRTMFQGSPDFEEQVESIFHSLSGLPVEIPTGPEGQTYTPATIRLLLEGREIAVHVGNDFL
LMPAANHLKTLLDLSDQLSYFIPLTVPEAGGELVVYNLEWNPQDAHKYIDEVESKFKSNQSQSVAYAPGPGDMLLFNGGR
YYHRVSEVIGNSPRRTIGGFLAFSKERNKIYYWS

The query sequence (length=274) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5trq:A 283 280 0.9672 0.9364 0.9464 0.0 8acv:A, 8acv:B, 8aut:A, 8aut:B, 8aut:C, 8aut:D, 6gem:A, 6gem:B, 6gem:C, 6gem:D, 5iqs:A, 5iqs:B, 5iqs:C, 5iqt:A, 5iqt:B, 5iqt:C, 5iqu:A, 5iqv:A, 5iqv:B, 5iqv:C, 5j4r:A, 5t22:A, 5t22:B
2 6s1r:A 391 132 0.1423 0.0997 0.2955 0.16 5wjc:A
3 7n3z:A 379 70 0.0730 0.0528 0.2857 0.19 7n3y:B, 7n3y:C, 7n3y:A, 7n3y:D
4 4xyi:A 375 126 0.1277 0.0933 0.2778 0.21
5 8fgw:B 1152 140 0.1350 0.0321 0.2643 0.41 8fh3:B
6 8of4:L 237 87 0.0693 0.0802 0.2184 0.46
7 5y2f:A 297 87 0.0693 0.0640 0.2184 0.87 8ak5:A, 8ak5:B, 8ak6:A, 8ak6:B, 8ak7:A, 8ak7:B, 8ak8:A, 8ak8:B, 8ak9:A, 8ak9:B, 8aka:A, 8aka:B, 8akb:A, 8akb:B, 8akc:A, 8akc:B, 8akd:A, 8akd:B, 8ake:A, 8ake:B, 8akf:A, 8akf:B, 8akg:A, 8akg:B, 8bl0:A, 8bl0:B, 8bl1:A, 8bl1:B, 7cl0:A, 7cl1:A, 8cnm:A, 8cnm:B, 8cno:A, 8cno:B, 8f86:K, 8g57:K, 9g7h:A, 9g7h:B, 6hoy:A, 6hoy:B, 8i2b:A, 8i2b:B, 3k35:A, 3k35:B, 3k35:C, 3k35:D, 3k35:E, 3k35:F, 5mf6:A, 5mf6:B, 5mfp:A, 5mfp:B, 5mfz:A, 5mfz:B, 5mgn:A, 5mgn:B, 3pki:A, 3pki:B, 3pki:C, 3pki:D, 3pki:E, 3pki:F, 3pkj:A, 3pkj:B, 3pkj:C, 3pkj:D, 3pkj:E, 3pkj:F, 6qcd:A, 6qcd:B, 6qce:A, 6qce:B, 6qch:A, 6qch:B, 6qcj:A, 6qcj:B, 5x16:A, 6xuy:A, 6xuy:B, 6xv1:A, 6xv1:B, 6xv6:A, 6xv6:B, 6xv6:C, 6xv6:D, 6xv6:E, 6xv6:F, 6xvg:A, 6xvg:B, 6xvg:C, 6xvg:D, 6xvg:E, 6xvg:F, 3zg6:A, 6zu4:A, 6zu4:B
8 8pxv:B 634 88 0.0839 0.0363 0.2614 2.0 8pxv:C
9 3wag:B 401 59 0.0584 0.0399 0.2712 7.5 3wad:A, 3wag:A
10 2am1:A 454 58 0.0657 0.0396 0.3103 7.9 2am2:A, 3zm5:A, 3zm6:A
11 3k9v:A 464 28 0.0401 0.0237 0.3929 8.6 3k9v:B, 3k9y:A, 3k9y:B
12 8ih5:A 689 56 0.0620 0.0247 0.3036 9.5 8ih5:F, 8ih5:B, 8ih5:C, 8ih5:D, 8ih5:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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