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BioLiP
>protein
ALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVA

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ntw:A 61 56 1.0000 0.9180 1.0000 3.88e-33 3ntw:C
2 1jgn:A 98 55 0.5357 0.3061 0.5455 3.36e-15 7bn3:C, 7bn3:A, 7bn3:B, 1jh4:A, 3ktp:A, 3ktr:A, 3kui:A, 3kuj:A, 3kus:A, 3kus:B, 3kut:A, 3kut:B, 3pkn:A, 3pth:A, 2rqg:B, 2rqh:B, 8smo:A, 8smo:C, 8smo:E, 8smo:G, 8smo:I, 8smo:K, 8smo:M, 8smo:O, 2x04:A, 2x04:B
3 6h7b:A 78 56 0.4286 0.3077 0.4286 4.01e-08 6h7b:C
4 6e5v:B 447 40 0.2500 0.0313 0.3500 0.39 6bsz:A, 6bsz:B, 6bt5:A, 6bt5:B, 6e5v:A
5 5vmt:E 293 29 0.2321 0.0444 0.4483 0.48
6 5lqz:A 506 25 0.1964 0.0217 0.4400 0.59 5lqx:A, 5lqx:B, 5lqx:C, 5lqy:A, 5lqy:B, 5lqy:C, 5lqz:B, 5lqz:C
7 7md2:B 458 27 0.1964 0.0240 0.4074 0.66
8 6cp3:C 508 27 0.1964 0.0217 0.4074 0.73 4b2q:A, 4b2q:B, 4b2q:C, 4b2q:a, 4b2q:b, 4b2q:c, 6b8h:K, 6b8h:B, 6b8h:C, 6b8h:n, 6b8h:W, 6b8h:X, 6cp3:A, 6cp3:B, 6cp6:A, 6cp6:B, 6cp6:C, 8f29:A, 8f29:B, 8f29:C, 8f2k:A, 8f2k:B, 8f2k:C, 8f39:A, 8f39:B, 8f39:C, 8fl8:A, 8fl8:B, 8fl8:C, 2hld:A, 2hld:B, 2hld:C, 2hld:J, 2hld:K, 2hld:L, 2hld:S, 2hld:T, 2hld:U, 7md2:A, 7md2:C, 7md3:A, 7md3:B, 7md3:C, 3oe7:A, 3oe7:B, 3oe7:C, 3oe7:J, 3oe7:K, 3oe7:L, 3oe7:S, 3oe7:T, 3oe7:U, 3oee:A, 3oee:B, 3oee:C, 3oee:J, 3oee:K, 3oee:L, 3oee:S, 3oee:T, 3oee:U, 3oeh:A, 3oeh:B, 3oeh:C, 3oeh:J, 3oeh:K, 3oeh:L, 3oeh:S, 3oeh:T, 3oeh:U, 3ofn:A, 3ofn:B, 3ofn:C, 3ofn:J, 3ofn:K, 3ofn:L, 3ofn:S, 3ofn:T, 3ofn:U, 7tjs:A, 7tjs:B, 7tjs:C, 7tjt:A, 7tjt:B, 7tjt:C, 7tju:A, 7tju:B, 7tju:C, 7tjv:A, 7tjv:B, 7tjv:C, 7tjw:A, 7tjw:B, 7tjw:C, 7tjx:A, 7tjx:B, 7tjx:C, 2wpd:A, 2wpd:B, 2wpd:C, 2xok:A, 2xok:B, 2xok:C, 3zia:A, 3zia:B, 3zia:C, 3zia:K, 3zia:L, 3zia:M, 3zry:A, 3zry:B, 3zry:C
9 8jd6:R 774 31 0.2321 0.0168 0.4194 0.93 7e9h:R, 7e9h:S, 8jd4:4, 8jd5:4, 8jd6:S
10 7rtm:A 571 38 0.2321 0.0228 0.3421 1.6 7rtm:B
11 7w02:A 1566 24 0.2143 0.0077 0.5000 5.3
12 8sfo:A 1240 19 0.1250 0.0056 0.3684 5.8 8sfi:A, 8sfp:A, 8sfq:A, 8sfr:A
13 3hm8:A 441 30 0.1786 0.0227 0.3333 6.2 3hm8:B, 3hm8:C, 3hm8:D
14 8sfn:A 1302 19 0.1250 0.0054 0.3684 6.2 8sfh:A, 8sfl:A, 5xh6:A, 5xh7:A
15 5kk5:A 1201 19 0.1250 0.0058 0.3684 6.2
16 5b43:A 1272 19 0.1250 0.0055 0.3684 6.4
17 5lzw:ii 372 38 0.1964 0.0296 0.2895 8.6 5lzx:ii, 5lzy:ii, 5lzz:ii

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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