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BioLiP
>protein
ALFTSLVGASGLGFATKFLSNKIRLKPAGYYPLGYVFSGVAWAGLGLVLHNVHQHSLEVLEKKK

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zkq:b 66 64 1.0000 0.9697 1.0000 4.24e-41 7o6y:b, 7o71:b, 6rfq:b, 6rfr:b, 6y79:b, 7zkp:b
2 5iku:A 240 21 0.1719 0.0458 0.5238 0.090 4hpk:A, 4hpk:B, 1nqd:A, 1nqd:B, 2o8o:A, 2o8o:B
3 7c4c:A 332 42 0.2031 0.0392 0.3095 8.8 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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