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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ALETVEVMLDWYPNAVHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVA
SVVRSPLNHVMFLAEQDFDSPADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGFELGASIVSGRADAVVGTY
INHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESGEVLAAFWRAALKGYEWMVENPDEALNVLLTNQDEAN
FPLIQEVEEESLSILLEKMENPNGPFGGQDAESWEEVISWLDAHDWLEQPVVAEDAFSSIT

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ix1:A 301 301 1.0000 1.0000 1.0000 0.0 3ix1:B
2 4nmy:A 299 307 0.2691 0.2709 0.2638 1.28e-30 4nmy:B
3 4h6d:B 329 234 0.1960 0.1793 0.2521 2.78e-21 4h67:B, 4h6d:A, 4h6d:E, 4h6d:H
4 7sbb:I 680 195 0.1628 0.0721 0.2513 0.43
5 5jcs:s 2003 43 0.0598 0.0090 0.4186 0.56
6 6hyp:A 2272 43 0.0598 0.0079 0.4186 0.62
7 6twi:E 323 60 0.0698 0.0650 0.3500 0.75 4cyw:A, 4cyw:C, 4cyw:E, 4cyz:A, 4cyz:E, 4cz0:A, 4cz0:E, 4cz0:C, 4d00:A, 4d00:C, 4d00:E, 4qy1:E, 4qy1:G, 4qy1:I, 4qy1:U, 4qy2:E, 5tgu:C, 5tgu:E, 5tgu:A, 5tgv:A, 5tgv:C, 5tgv:E, 5th1:A, 5th1:C, 5th1:E, 5thc:E, 5thc:C, 6tva:A, 6tva:C, 6tva:E, 6tvb:A, 6tvb:C, 6tvb:E, 6tvd:A, 6tvd:C, 6tvd:E, 6tvd:G, 6tvd:I, 6tvd:K, 6tvf:A, 6tvf:C, 6tvf:E, 6tvf:G, 6tvf:K, 6tvf:I, 6tvr:K, 6tvs:C, 6tvs:E, 6tvs:K, 6tvt:A, 6tvt:C, 6tvt:E, 6twi:A, 6twi:C, 6twv:C, 6twv:E, 6twv:K, 6twv:G, 6twv:I, 6txo:A, 6txo:C, 6txo:E, 6ty1:A, 6ty1:C, 6ty1:E, 6ty1:G, 6ty1:I, 6ty1:K, 4xqo:A, 4xqo:C, 4xqu:A, 4xqu:C, 4xqu:E
8 7xi4:A 283 92 0.0731 0.0777 0.2391 1.0 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
9 7sba:I 899 128 0.1030 0.0345 0.2422 2.0 7sba:K, 7sbb:J, 7sbb:K
10 8hz5:A 350 43 0.0532 0.0457 0.3721 2.1
11 4gvo:A 236 74 0.0598 0.0763 0.2432 3.6 4gvo:B
12 7mq8:NH 1066 78 0.0698 0.0197 0.2692 5.5 7mqa:NH
13 6wy8:B 384 30 0.0399 0.0312 0.4000 5.7 6wy8:D, 6wy9:A
14 7kz3:D 439 95 0.0731 0.0501 0.2316 9.8 7kz5:A, 7kz5:B, 7kz5:C, 7kz5:D, 7kz6:A, 7kz6:B, 7kz6:C, 7kz6:D, 7kzd:A, 7kzd:B, 7kzd:C, 7kzd:D, 7kzd:E, 7kzd:H, 7kzd:F, 7kzd:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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