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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALEQLQSHIEGWEGSNLTDICTQLLLQGTLLKISAGNIQERAFFLFDNLLVYCKRKSRVSLYIFRGRINTEVMEVENVED
GTADYHSNGYTVTNGWKIHNTAKNKWFVCMAKTAEEKQKWLDAIIREREQRESLKL

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tua:A 1329 136 0.9779 0.1001 0.9779 1.37e-87 5d3x:A, 5d3x:B, 5d3y:A, 5d3y:B, 5fi0:A, 5fi0:C, 5fi0:E, 5fi0:G
2 2a3w:A 204 57 0.1618 0.1078 0.3860 1.7 2a3w:J, 2a3w:B, 2a3w:I, 2a3w:C, 2a3w:H, 2a3w:D, 2a3w:G, 2a3w:E, 2a3w:F, 2a3w:K, 2a3w:L, 2a3w:T, 2a3w:M, 2a3w:S, 2a3w:N, 2a3w:R, 2a3w:O, 2a3w:P, 2a3w:Q, 2a3x:A, 2a3x:B, 2a3x:C, 2a3x:J, 2a3x:D, 2a3x:E, 2a3x:F, 2a3x:G, 2a3x:H, 2a3x:I, 2a3y:A, 2a3y:B, 2a3y:C, 2a3y:D, 2a3y:E, 4avs:A, 4avs:B, 4avs:C, 4avs:D, 4avs:E, 4avt:A, 4avt:B, 4avt:C, 4avt:D, 4avt:E, 4avt:F, 4avt:G, 4avt:H, 4avt:I, 4avt:J, 4avv:E, 4avv:A, 4avv:B, 4avv:C, 4avv:D, 4ayu:A, 4ayu:B, 4ayu:C, 4ayu:D, 4ayu:E, 1gyk:A, 1gyk:B, 1gyk:C, 1gyk:D, 1gyk:E, 3kqr:A, 3kqr:B, 3kqr:C, 3kqr:D, 3kqr:E, 1lgn:A, 1lgn:B, 1lgn:C, 1lgn:D, 1lgn:E, 1sac:A, 1sac:B, 1sac:C, 1sac:D, 1sac:E, 2w08:A, 2w08:B, 2w08:C, 2w08:D, 2w08:E
3 5dte:B 287 35 0.1029 0.0488 0.4000 1.9 5dte:A, 5dte:C, 5dte:D
4 7z6e:C 534 29 0.0882 0.0225 0.4138 3.6 7z6e:A, 7z6e:B, 7z6e:D, 7z6e:E
5 5nly:B 351 62 0.1471 0.0570 0.3226 9.2 6fne:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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