Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALDAAYCFRNVQDNCCLRPLYIDFRKDLGWKWIHEPKGYNANFCAGACPKSPSCVSQDLEPLTIVYYVGRKPKVEQLSNM
IVKSCKCS

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5tx6:A 88 88 1.0000 1.0000 1.0000 5.42e-63
2 6y6n:A 116 107 0.3636 0.2759 0.2991 1.48e-09 6y6o:A
3 6omn:G 108 107 0.3409 0.2778 0.2804 1.55e-06 6omn:E, 6omn:H
4 8bwl:A 105 102 0.3295 0.2762 0.2843 0.002 8bwl:B, 8bwm:A, 8bwm:B, 8bwn:A, 8bwn:B
5 4yci:C 105 36 0.1705 0.1429 0.4167 0.40
6 1h46:X 431 44 0.1250 0.0255 0.2500 0.84 1z3t:A, 1z3v:A, 1z3w:A
7 3pfx:A 436 33 0.1023 0.0206 0.2727 3.7 3pfz:A, 3pl3:A
8 2ceq:A 489 22 0.0795 0.0143 0.3182 6.2 2ceq:B, 2cer:A, 2cer:B, 4ean:A, 4ean:B, 5ixe:A, 5ixe:B, 1uwr:A, 1uwr:B, 1uws:B, 1uws:A, 1uwt:A, 1uwt:B, 1uwu:A, 1uwu:B, 7uz1:A, 7uz1:B, 7uz2:A, 7uz2:B
9 6ltp:G 923 27 0.1023 0.0098 0.3333 6.4 6ltp:A
10 2b51:A 444 22 0.1023 0.0203 0.4091 7.2 2b56:A
11 5chc:A 895 20 0.0909 0.0089 0.4000 7.6 5ch7:A, 5ch7:C, 5ch7:E, 5chc:C, 5chc:E, 5e7o:A, 5e7o:C, 5e7o:E, 5e7o:G, 5e7o:I, 5e7o:K, 4ydd:A, 4ydd:C, 4ydd:E
12 8p5d:LC0 327 62 0.1818 0.0489 0.2581 8.3 8p60:LC0, 8p60:KC0, 7qca:LC0
13 6lu0:A 937 27 0.1023 0.0096 0.3333 9.1
14 6ltr:A 1037 27 0.1023 0.0087 0.3333 9.1 6ltu:A
15 6e60:A 538 36 0.1136 0.0186 0.2778 9.8 6dmf:A, 6dmf:B, 6dmf:C, 6dmf:D, 6dmf:E, 6dmf:F, 6dmf:G, 6dmf:H, 6dmf:I, 6dmf:J, 6e61:A, 6e61:B, 7nox:A, 7nox:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218