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BioLiP
>protein
AKYTGKCTKSKNECKYKNDAGKDTFIKCPKFDNKKCTKDNNKCTVDTYNNAVDCD

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ha4:A 55 55 1.0000 1.0000 1.0000 2.58e-32 6hah:A, 6haj:A, 6haj:B
2 7bad:A 58 55 0.3455 0.3276 0.3455 2.85e-05
3 1lba:A 146 46 0.2545 0.0959 0.3043 1.2
4 6nf0:A 298 20 0.1636 0.0302 0.4500 3.7 6bt2:A
5 6co7:A 1061 33 0.1818 0.0094 0.3030 8.2 6co7:B, 6co7:C, 6co7:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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