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BioLiP
>protein
AKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASMLLELGLRVHE

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4qpq:B 52 50 1.0000 0.9615 1.0000 4.06e-31 4qpq:A, 4qpq:C, 4qpq:D, 4qpq:E, 4qpq:F, 4qpq:G, 4qpq:H
2 3on0:A 121 49 0.4600 0.1901 0.4694 1.95e-09 3omy:B, 3on0:B, 3on0:C, 3on0:D
3 8ddr:A 968 35 0.2200 0.0114 0.3143 2.3 8ddq:A, 8ddq:B, 8ddq:C, 8ddq:D, 8ddr:B, 8ddr:C, 8ddr:D, 8dds:A, 8dds:B, 8dds:C, 8dds:D, 8ddt:A, 8ddt:B, 8ddt:C, 8ddt:D, 8ddu:A, 8ddu:B, 8ddu:C, 8ddu:D, 8ddv:A, 8ddv:B, 8ddv:C, 8ddv:D, 8ddx:A, 8ddx:B, 8ddx:C, 8ed7:A, 8ed7:B, 8ed7:C, 8ed7:D, 8ed8:A, 8ed8:B, 8ed8:C, 8ed8:D, 8ed9:A, 8ed9:B, 8ed9:C, 8ed9:D
4 8ddx:D 992 35 0.2200 0.0111 0.3143 2.3
5 5abm:A 494 22 0.2000 0.0202 0.4545 3.7 5abm:B, 5abm:C, 5abm:D, 5ac0:A, 5ac0:B, 5ac1:A, 5ac1:B, 5ac1:C, 5ac1:D, 5ac2:A, 1bxs:A, 1bxs:B, 1bxs:C, 1bxs:D, 6dum:A, 8ene:A, 8ene:B, 8ene:C, 8ene:D, 7jws:A, 7jwt:A, 7jwu:A, 7jwv:A, 7jww:A, 5l2m:A, 5l2n:A, 5l2o:A, 5l2o:B, 5l2o:C, 5l2o:D, 5l2o:E, 5l2o:F, 5l2o:G, 5l2o:H, 8t0n:A, 8t0t:A, 5tei:A, 7um9:A, 4wb9:A, 8wfq:A, 8wfq:B, 8wfq:C, 8wfq:D, 8wfq:E, 8wfq:F, 8wfq:G, 8wfq:H, 4wp7:A, 4wpn:A, 4x4l:A
6 8ddw:D 719 35 0.2200 0.0153 0.3143 3.8
7 8ddw:A 695 35 0.2200 0.0158 0.3143 3.9 8ddw:B, 8ddw:C
8 6p7m:A 1070 26 0.2400 0.0112 0.4615 4.1 6p7n:A, 6p7n:E
9 6kl9:A 1180 26 0.2400 0.0102 0.4615 4.3
10 6klb:A 1118 26 0.2400 0.0107 0.4615 4.4 6klb:D
11 5xut:A 1217 26 0.2400 0.0099 0.4615 4.5 5id6:A, 6nm9:B, 6nm9:D, 6nma:B, 6nmc:A, 6nmd:A, 6nme:A, 6omv:B, 5xus:A, 5xuu:A, 5xuz:A, 5xuz:E
12 2q7s:B 280 43 0.3200 0.0571 0.3721 5.2 2q7s:A
13 5jcs:s 2003 35 0.2200 0.0055 0.3143 7.8
14 1cnz:A 363 38 0.2600 0.0358 0.3421 8.9 1cnz:B
15 2fni:A 374 14 0.2000 0.0267 0.7143 8.9 2fni:B, 2fnu:A, 2fnu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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