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BioLiP
>protein
AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFG
NMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYG
ATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG

The query sequence (length=197) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7q6n:D 204 196 0.9391 0.9069 0.9439 2.52e-137 3b6i:A, 3b6i:B, 3b6j:A, 3b6j:B, 3b6k:A, 3b6k:B, 3b6m:A, 3b6m:B, 4dy4:A, 4dy4:C, 5f12:A, 5f12:B, 7q6n:A, 7q6n:B, 7q6n:C, 2r96:A, 2r96:C, 2r97:A, 2r97:C, 4yqe:A, 4yqe:B, 3zho:A, 3zho:B
2 4laf:A 207 200 0.5838 0.5556 0.5750 3.12e-74 4laf:B, 4laf:C, 4laf:D
3 5f4b:A 173 196 0.5178 0.5896 0.5204 3.88e-58 5f4b:B
4 2a5l:B 175 194 0.3807 0.4286 0.3866 4.69e-34 2a5l:A, 1zwl:A
5 1yrh:F 202 171 0.3198 0.3119 0.3684 1.40e-23 1yrh:A, 1yrh:B, 1yrh:C, 1yrh:D, 1yrh:E, 1yrh:G, 1yrh:H
6 3edo:A 151 124 0.1675 0.2185 0.2661 3.12e-04 3edo:B
7 2oys:A 230 83 0.0964 0.0826 0.2289 0.25 2oys:B
8 4dik:A 402 121 0.1624 0.0796 0.2645 0.36 4dik:B, 4dil:A, 4dil:B, 5v8s:A, 5v8s:B, 1vme:A, 1vme:B
9 4ure:B 248 139 0.2030 0.1613 0.2878 0.38 4urf:A, 4urf:B
10 1e5d:A 401 77 0.1168 0.0574 0.2987 0.59 1e5d:B
11 4j8p:A 156 124 0.1624 0.2051 0.2581 0.64
12 2ohh:A 403 117 0.1675 0.0819 0.2821 1.0 2ohh:B, 2ohh:D, 2ohh:E, 2ohi:A, 2ohi:B, 2ohi:D, 2ohi:E, 2ohi:G, 2ohi:H, 2ohi:I, 2ohi:J, 2ohj:A, 2ohj:B, 2ohj:D, 2ohj:E
13 2mt9:A 173 77 0.1066 0.1214 0.2727 1.3
14 3l9x:A 336 123 0.1472 0.0863 0.2358 1.7 3l9x:B
15 3l9w:B 357 125 0.1472 0.0812 0.2320 1.7 3eyw:A, 3eyw:B, 3l9w:A
16 6s54:A 453 50 0.0812 0.0353 0.3200 3.8 6s54:B, 6s54:C, 6s54:D
17 2fcr:A 173 29 0.0609 0.0694 0.4138 4.3
18 5fjg:A 269 48 0.0914 0.0669 0.3750 4.4 6ab9:A, 6aba:A, 5b2n:A, 7cri:A, 7crj:A, 7crk:A, 7crl:A, 7crs:A, 7crt:A, 7crx:A, 7cry:A, 5g28:A, 5g2a:A, 5g2c:A, 5g2d:A, 5g54:A, 6jy6:A, 6jy7:A, 6jy8:A, 6jy9:A, 6jya:A, 6jyb:A, 6jyc:A, 6jyd:A, 6jye:A, 6jyf:A, 7o8f:A, 7o8g:A, 7o8h:A, 7o8i:A, 7o8j:A, 7o8k:A, 7o8l:A, 7o8m:A, 7o8n:A, 7o8o:A, 7o8p:A, 7o8q:A, 7o8r:A, 7o8s:A, 7o8t:A, 7o8u:A, 7o8v:A, 7o8y:A, 7o8z:A, 7vgt:A, 7vgu:A, 7vgv:A, 7vgv:B, 7vgv:C, 5ztk:A, 5ztl:A
19 3hwr:A 299 31 0.0660 0.0435 0.4194 4.4 3hwr:B
20 8wb4:D 342 59 0.0914 0.0526 0.3051 5.2 8iwh:D, 8iwh:d, 6j3y:D, 6j3y:d, 6j3z:D, 6j3z:d, 6j40:D, 6j40:d, 8j5k:D, 8j5k:d, 6jlu:D, 6jlu:d, 7vd5:D, 7vd5:d, 8wb4:d, 8xlp:d, 8xlp:D, 8xr6:D, 8xr6:d, 7y5e:DL, 7y5e:D6, 7y5e:d6, 7y5e:dL, 7y7a:D9, 7y7a:d9, 7y7a:DE, 7y7a:dE, 7y7a:DO, 7y7a:dO, 7y7a:DZ, 7y7a:dZ, 7y7a:Dm, 7y7a:dm
21 5v2c:b 506 110 0.1523 0.0593 0.2727 6.6 3a0b:B, 3a0b:b, 3a0h:B, 3a0h:b, 2axt:B, 2axt:b, 5b5e:B, 5b5e:b, 5b66:B, 5b66:b, 7cji:B, 7cji:b, 7cjj:B, 7cjj:b, 7cou:B, 7cou:b, 7czl:B, 7czl:b, 7d1t:B, 7d1t:b, 7d1u:B, 7d1u:b, 6dhe:B, 6dhe:b, 6dhf:B, 6dhf:b, 6dhg:B, 6dhg:b, 6dhh:B, 6dhh:b, 6dho:B, 6dho:b, 6dhp:B, 6dhp:b, 7dxa:b, 7dxh:b, 5e79:B, 5e79:b, 5e7c:B, 5e7c:b, 7eda:B, 9evx:B, 9evx:b, 8ez5:B, 8ez5:b, 8f4c:B, 8f4c:b, 8f4d:B, 8f4d:b, 8f4e:B, 8f4e:b, 8f4f:B, 8f4f:b, 8f4g:B, 8f4g:b, 8f4h:B, 8f4h:b, 8f4i:B, 8f4i:b, 8f4j:B, 8f4j:b, 8f4k:B, 8f4k:b, 4fby:B, 4fby:N, 8gn0:B, 8gn0:b, 8gn1:B, 8gn1:b, 8gn2:B, 8gn2:b, 5gth:B, 5gth:b, 5gti:B, 5gti:b, 5h2f:B, 5h2f:b, 4il6:B, 4il6:b, 8ir5:B, 8ir5:b, 8ir6:B, 8ir6:b, 8ir7:B, 8ir7:b, 8ir8:B, 8ir8:b, 8ir9:B, 8ir9:b, 8ira:B, 8ira:b, 8irb:B, 8irb:b, 8irc:B, 8irc:b, 8ird:B, 8ird:b, 8ire:B, 8ire:b, 8irf:B, 8irf:b, 8irg:B, 8irg:b, 8irh:B, 8irh:b, 8iri:B, 8iri:b, 4ixq:B, 4ixq:b, 4ixr:B, 4ixr:b, 6jlj:B, 6jlj:b, 6jlk:B, 6jlk:b, 6jll:B, 6jll:b, 6jlm:B, 6jlm:b, 6jln:B, 6jln:b, 6jlo:B, 6jlo:b, 6jlp:B, 6jlp:b, 5kaf:B, 5kaf:b, 5kai:B, 5kai:b, 3kzi:B, 5mx2:B, 5mx2:b, 7nho:B, 7nhp:B, 7nhq:B, 4pbu:B, 4pbu:b, 4pj0:B, 4pj0:b, 7rf1:B, 7rf1:b, 7rf2:B, 7rf2:b, 7rf3:B, 7rf3:b, 7rf4:B, 7rf4:b, 7rf5:B, 7rf5:b, 7rf6:B, 7rf6:b, 7rf7:B, 7rf7:b, 7rf8:B, 7rf8:b, 4rvy:B, 4rvy:b, 1s5l:B, 1s5l:b, 5tis:B, 5tis:b, 4tnh:B, 4tnh:b, 4tni:B, 4tni:b, 4tnj:B, 4tnj:b, 4tnk:B, 4tnk:b, 4ub6:B, 4ub6:b, 4ub8:B, 4ub8:b, 5v2c:B, 4v62:AB, 4v62:BB, 4v82:AB, 4v82:BB, 6w1o:B, 6w1o:b, 6w1p:B, 6w1p:b, 6w1q:B, 6w1q:b, 6w1r:B, 6w1r:b, 6w1t:B, 6w1t:b, 6w1u:B, 6w1u:b, 6w1v:B, 6w1v:b, 1w5c:B, 1w5c:H, 5ws5:B, 5ws5:b, 5ws6:B, 5ws6:b, 3wu2:B, 3wu2:b, 7yq2:B, 7yq2:b, 7yq7:B, 7yq7:b, 5zzn:B, 5zzn:b

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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