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BioLiP Library
>protein
AKSLRSKWKRKMRAEKRKKNAPKEASRLKSILKLKRNKKTLLDQHGQYPIWMNQRQRKRLKAKREKRKG

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fkw:NK 69 69 1.0000 1.0000 1.0000 5.60e-42 8fkt:NK, 8fku:NK, 8fkv:NK, 8fkx:NK, 8fky:NK, 8fkz:NK, 8fl0:NK, 8fl2:NK, 8fl3:NK, 8fl4:NK, 8fl6:NK, 8fl7:NK, 8fl9:NK, 8fla:NK, 8flb:NK, 8flc:NK, 8fld:NK, 8fle:NK, 8flf:NK, 8idt:z, 8idy:z, 8ie3:z, 8ine:z, 8inf:z, 8ink:z, 8ipd:z, 8ipx:z, 8ipy:z, 8ir1:z, 8ir3:z, 6lss:z, 6lu8:z
2 4ymu:J 240 27 0.1739 0.0500 0.4444 3.2 4ymu:A, 4ymv:J, 4ymv:A
3 4pos:J 274 17 0.1304 0.0328 0.5294 5.8 4por:B, 4por:A, 4por:C, 4por:D, 4por:E, 4por:F, 4por:H, 4por:G, 4por:I, 4por:J, 4pos:B, 4pos:A, 4pos:C, 4pos:E, 4pos:D, 4pos:G, 4pos:F, 4pos:H, 4pos:I, 4pot:B, 4pot:A, 4pot:C, 4pot:D, 4pot:E, 4pot:G, 4pot:F, 4pot:H, 4pot:I, 4pot:J
4 6ha8:V 541 30 0.1739 0.0222 0.4000 6.2
5 7km3:F 190 31 0.1739 0.0632 0.3871 7.7 7km2:L, 7km2:D, 7km2:I, 7km2:A, 7km2:B, 7km2:K, 7km2:C, 7km2:E, 7km2:J, 7km2:F, 7km2:G, 7km2:H, 7km3:L, 7km3:D, 7km3:I, 7km3:A, 7km3:B, 7km3:G, 7km3:K, 7km3:C, 7km3:E, 7km3:H, 7km3:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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