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BioLiP Library
>protein
AKSLRASSHLNAKSVKRRGVFQKAVDAREQRISDKLKEDLLKQKLEDLKKKEEQG

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8hfr:zp 88 55 1.0000 0.6250 1.0000 3.08e-32 7bt6:z, 7btb:z, 6elz:z, 6em1:z, 6em5:z, 6ft6:z, 3jct:z, 6m62:z, 6n8j:z, 6n8k:z, 6n8l:z, 7nac:z, 7oh3:z, 7ohq:z, 7r7a:z, 7u0h:z, 7uoo:z, 7uqb:z, 7uqz:z, 7v08:z, 8v87:z, 6ylx:z, 6yly:z, 7z34:z
2 7ug6:z 77 50 0.9091 0.6494 1.0000 2.01e-28 6ylg:z, 6ylh:z
3 2xts:A 389 18 0.1636 0.0231 0.5000 2.4 2xts:C
4 4eac:C 396 61 0.3818 0.0530 0.3443 3.2 4eac:A, 4eac:B, 4eac:D, 4eay:A, 4eay:B, 4eay:C, 4eay:D
5 7s1x:B 871 14 0.1636 0.0103 0.6429 4.1 7mxo:A, 7mxo:B, 7n3n:A, 7n3n:B, 7s1x:A, 7s1y:A, 7s1y:B, 7sfl:A, 7sfl:B, 7smp:B, 7smp:A, 8ste:A, 8ste:B, 7zgo:A, 7zgo:B
6 2i0z:A 416 45 0.2727 0.0361 0.3333 4.7
7 4c3s:A 435 22 0.1636 0.0207 0.4091 4.7 5dbv:A
8 3i09:A 375 51 0.3091 0.0453 0.3333 6.8 3i09:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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