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BioLiP
>protein
AKSARASRIKENHQRFKKNIAGPVEAARLERLSAKLMAIAQASGVKSGKSIGRKDSSIVFPM

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i9t:CO 62 62 1.0000 1.0000 1.0000 8.31e-39 8i9v:CO, 8i9w:CO, 8i9x:CO, 8i9y:CO, 8i9z:CO, 8ia0:CO, 8pv1:CO, 8pv2:CO, 8pv3:CO, 8pv4:CO, 8pv5:CO, 8pv6:CO, 8pv7:CO, 8pv8:CO, 8pvk:CO, 8pvl:CO
2 8atu:A 2837 49 0.2581 0.0056 0.3265 0.65 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
3 8auw:A 2900 49 0.2581 0.0055 0.3265 0.65
4 2cgj:A 479 32 0.1774 0.0230 0.3438 2.4 2cgl:A, 2uyt:A
5 4re6:A 577 45 0.2903 0.0312 0.4000 2.6 2hu5:A, 2hu5:B, 2hu7:A, 2hu7:B, 2hu8:A, 2hu8:B, 4re5:A, 4re5:B, 4re6:C, 1ve7:A, 1ve7:B
6 6a7i:A 409 32 0.1774 0.0269 0.3438 2.7 6a7j:A
7 5u04:A 478 47 0.2419 0.0314 0.3191 4.6
8 6z2c:A 178 54 0.2258 0.0787 0.2593 5.2 6z2c:B, 6z2c:C
9 5olw:A 224 37 0.2419 0.0670 0.4054 5.8 4c4r:A, 4c4s:A, 4c4t:A, 3fm9:A, 6h8u:A, 6h8v:A, 6h8v:B, 6h8w:A, 6h8x:A, 6h8x:B, 6h8y:A, 6h8z:A, 6h90:A, 6h91:A, 6h91:B, 6h92:A, 6h92:B, 6h93:A, 6h93:B, 6h94:A, 6hdg:A, 6hdh:A, 6hdh:B, 6hdi:A, 6hdi:B, 6hdj:A, 6hdk:A, 6hdl:A, 6hdm:A, 6i03:A, 1lvh:A, 1lvh:B, 1o03:A, 1o08:A, 5o6p:A, 5o6r:A, 5ojz:A, 5ok0:A, 5ok1:A, 5ok2:A, 5olw:B, 5olx:A, 5oly:A, 5oly:G, 8q1c:A, 8q1c:B, 8q1d:A, 8q1e:A, 8q1f:A, 8q1f:B, 6qzg:A, 6qzg:B, 2wf5:A, 2wf6:A, 2wf7:A, 2wf8:A, 2wf9:A, 2wfa:A, 2whe:A, 6ydj:A, 6ydk:A, 6ydl:A, 6ydm:A, 6ydm:B, 1z4n:A, 1z4n:B, 1z4o:A, 1z4o:B, 3zi4:A, 1zol:A
10 6aay:A 1199 20 0.1613 0.0083 0.5000 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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