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BioLiP
>protein
AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ
HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLL
KLCKEFEKPISRIEIILNRADTNSRITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKVAPKSQLSKTIVDWALHL

The query sequence (length=240) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ea0:B 242 240 0.9958 0.9876 0.9958 1.03e-174 3ea0:A
2 1ion:A 243 239 0.2458 0.2428 0.2469 1.12e-15
3 1g3q:A 237 239 0.2458 0.2489 0.2469 3.72e-14 1g3r:A
4 4rz3:A 244 247 0.2708 0.2664 0.2632 7.35e-13 4rz3:B
5 4v02:A 244 177 0.2000 0.1967 0.2712 1.26e-06 4v02:B, 4v03:A, 4v03:B
6 6riq:C 254 226 0.2000 0.1890 0.2124 0.004 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
7 2h9d:A 84 46 0.0750 0.2143 0.3913 0.040
8 3kjg:A 254 99 0.0958 0.0906 0.2323 0.40 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
9 6eko:A 312 51 0.0708 0.0545 0.3333 0.61 6eko:B
10 6n9m:A 331 46 0.0583 0.0423 0.3043 0.86
11 5aup:I 241 205 0.2000 0.1992 0.2341 1.1 5aun:B, 5auo:B, 5aup:B, 3vx3:A, 3vx3:B
12 2oze:A 284 128 0.1500 0.1268 0.2812 1.3
13 5tvk:B 242 135 0.1417 0.1405 0.2519 1.6 3k9g:A, 5tvk:A
14 2hvr:A 319 221 0.1958 0.1473 0.2127 2.0 2hvq:A, 2hvr:B, 2hvs:A, 2hvs:B, 1s68:A
15 6irw:A 494 55 0.0708 0.0344 0.3091 4.3 6irw:B
16 4jlv:A 228 126 0.1250 0.1316 0.2381 4.7
17 3ez2:B 394 186 0.1833 0.1117 0.2366 5.2 3ez2:A, 3ez6:A, 3ez6:B
18 8cnr:A 548 36 0.0583 0.0255 0.3889 5.9 8cns:A
19 7ecr:A 460 27 0.0458 0.0239 0.4074 7.2 7ecr:B, 7ecr:C, 7ecs:A, 7ecs:B, 7ecs:C, 7ect:A, 7ect:B, 7ect:C
20 5uak:A 1139 139 0.1250 0.0263 0.2158 7.8 2bbs:B, 7svr:A, 8v81:A
21 6f8z:A 715 50 0.0542 0.0182 0.2600 8.9 6f8z:B, 6f8z:C, 6f90:A, 6f90:B, 6f90:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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