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BioLiP
>protein
AKQRESTDAIFVHCSATKPSQNVGVREIRQWHKEQGWLDVGYHFIIKRDGTVEAGRDEMAVGSHAKGYNHNSIGVCLVGG
IDDKGKFDANFTPAQMQSLRSLLVTLLAKYEGAVLRAHHEVAPKACPSFDLKRWWEKNELVTSDRG

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1lba:A 146 146 1.0000 1.0000 1.0000 1.60e-109
2 6srt:A 152 108 0.2945 0.2829 0.3981 1.02e-20 6ssc:A
3 4z8i:A 224 124 0.2808 0.1830 0.3306 3.70e-13
4 7f5i:A 153 135 0.2671 0.2549 0.2889 6.15e-13
5 1oht:A 173 120 0.2466 0.2081 0.3000 1.49e-10 7nsx:AAA, 7nsz:AAA, 7nt0:AAA, 7nt0:BBB
6 2cb3:C 173 67 0.1712 0.1445 0.3731 1.96e-08 2cb3:A, 2cb3:B, 2cb3:D
7 2f2l:X 166 104 0.2123 0.1867 0.2981 2.75e-08
8 6fhg:A 156 125 0.2671 0.2500 0.3120 3.61e-08 6fhg:B
9 2xz4:A 165 142 0.2534 0.2242 0.2606 7.56e-08
10 2aph:A 165 83 0.1849 0.1636 0.3253 8.46e-08 2aph:B, 1sk4:A, 1twq:A
11 3cg9:A 171 120 0.2603 0.2222 0.3167 4.01e-07 6a89:B, 6a89:A, 6a89:D, 3cg9:B, 3cxa:A, 3cxa:B, 7dy5:C, 5e0b:C, 4fnn:A, 4fnn:B, 4fnn:D, 4gf9:D, 4gf9:C, 3ng4:C, 3ng4:D, 3nno:D, 3nw3:D, 3o4k:A, 3o4k:C, 3o4k:D, 3ogx:C, 3ogx:A, 4opp:A, 4opp:B, 4opp:D, 4opp:C, 4orv:D, 4oug:C, 4oug:D, 4q8s:A, 4q8s:C, 4q8s:D, 4q9e:D, 3qv4:C, 3rt4:C, 3rt4:D, 3t2v:B, 3t2v:D, 3t39:D, 3tru:D, 3usx:B, 7xfw:C, 7xfx:C, 7xfy:C, 7xfy:D, 7xu8:A, 7xu8:B
12 6su5:A 154 101 0.1986 0.1883 0.2871 2.47e-06
13 2eax:C 164 56 0.1096 0.0976 0.2857 0.009
14 2f2l:A 167 34 0.0890 0.0778 0.3824 0.063
15 3d2y:A 257 67 0.1575 0.0895 0.3433 0.33 2bh7:A, 3d2z:A, 2wkx:A
16 6ttb:A 331 64 0.1301 0.0574 0.2969 1.2
17 6ei3:A 511 30 0.0959 0.0274 0.4667 2.2
18 4uvm:A 505 25 0.0890 0.0257 0.5200 3.9
19 5ave:A 252 33 0.0822 0.0476 0.3636 6.4 5avf:A, 5avf:B, 3c8c:A, 3c8c:B, 6iov:A, 6iov:B
20 4ipi:A 351 35 0.0753 0.0313 0.3143 6.8 4ipj:A, 6ppw:A, 6ppy:A, 6ppz:A, 2wqp:A, 1xuu:A, 1xuz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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