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BioLiP
>protein
AKPLEMFGGVDIDLEDTPAHWTIKASPVLEPCKDNKKFHKKLKDELYKVKKNQQKFAEGSAAYARFNKKIKMIELRETAY
GDRLCGKKDGLPRTIATGEWNVRGSAMWPAAIFLYIAGWIGWAGRSYLIRTNDAAKEINIDVPLAVTCMASGFSWPVAAW
QEIVNGEMAVPNDQIHNGGPWNQS

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jze:f 184 184 1.0000 1.0000 1.0000 3.26e-138 8jzf:f
2 8jjr:f 169 169 0.7065 0.7692 0.7692 1.09e-97
3 8jw0:f 185 169 0.4891 0.4865 0.5325 4.15e-58
4 8wey:F 158 152 0.3370 0.3924 0.4079 1.18e-37
5 7blz:F 155 152 0.3370 0.4000 0.4079 1.63e-37 6fos:F, 5zgb:F, 5zgh:F
6 7y5e:FN 158 153 0.3478 0.4051 0.4183 2.20e-36 7y5e:F2, 7y7a:F7, 7y7a:Fo
7 5l8r:F 154 147 0.3587 0.4286 0.4490 2.48e-35 7dkz:F, 4rku:F, 4y28:F, 6yac:F, 6yez:F, 6zoo:F, 6zxs:F
8 8wm6:F 161 153 0.3315 0.3789 0.3987 8.71e-34 8wmj:F, 8wmv:F, 8wmw:F
9 6ly5:f 162 147 0.3533 0.4012 0.4422 1.32e-33 3lw5:F, 2o01:F, 2wsc:F, 2wse:F, 2wsf:F, 4xk8:F, 4xk8:f
10 7y7b:F 160 153 0.3315 0.3812 0.3987 2.10e-33 7y8a:F
11 7wfe:BF 154 146 0.3533 0.4221 0.4452 3.08e-33 8j6z:F, 8j7a:F, 8j7b:F, 7wfd:AF, 7wg5:AF, 7wg5:BF, 8wgh:F
12 5zji:F 158 153 0.3533 0.4114 0.4248 4.06e-33
13 8htu:F 161 153 0.3533 0.4037 0.4248 3.30e-32 7ksq:F, 7kux:F, 6l35:F, 7xqp:F
14 8bcv:F 158 153 0.3533 0.4114 0.4248 1.95e-31 7ew6:F, 7ewk:F, 7f9o:F, 7f9o:j
15 7dr0:F 161 153 0.3152 0.3602 0.3791 3.84e-31 7dr1:F, 7dr2:aF, 7dr2:bF, 7dr2:cF, 7dr2:dF
16 6l4u:F 161 153 0.2989 0.3416 0.3595 2.86e-30
17 4fe1:F 141 151 0.3098 0.4043 0.3775 3.78e-30 7fix:F1, 7fix:F2, 7fix:F3, 1jb0:F, 6k33:bF, 6k33:aF, 6k33:cF, 7m75:F, 7m76:F, 7m78:F, 3pcq:F, 6pfy:Q, 6pfy:F, 6pfy:d, 6pgk:Q, 6pgk:F, 6pgk:d, 6tra:F, 6trc:F, 6trc:f, 6trc:6, 6trd:F, 6trd:f, 6trd:6, 5zf0:F1, 5zf0:F2, 5zf0:F3, 5zf0:F4, 5zf0:F6, 5zf0:F5
18 7yca:F 165 153 0.3261 0.3636 0.3922 4.59e-27
19 7qco:F 141 151 0.2935 0.3830 0.3576 5.84e-27 7qco:O, 7qco:o, 7qco:f
20 6kif:F 136 154 0.3424 0.4632 0.4091 1.41e-25 6kif:R, 6kif:j, 6kig:F, 6kig:R, 6kig:j
21 6igz:F 163 157 0.2989 0.3374 0.3503 1.13e-24
22 6vpv:F 141 104 0.2391 0.3121 0.4231 3.76e-23 6vpv:f, 6vpv:6
23 7f4v:aF 151 147 0.2772 0.3377 0.3469 4.46e-23 7f4v:bF, 7f4v:cF
24 6qph:F 163 157 0.2989 0.3374 0.3503 4.47e-23 6rhz:F, 6sl5:F, 6yxr:F
25 7lx0:Q 135 101 0.2554 0.3481 0.4653 5.55e-23 7lx0:f, 7lx0:F, 6pnj:Q, 6pnj:f, 6pnj:F
26 6hqb:F 143 151 0.2772 0.3566 0.3377 2.11e-22 8am5:f, 8asl:f, 8asp:f, 4kt0:F, 6nwa:F, 6nwa:f, 6nwa:Q, 5oy0:F, 5oy0:f, 5oy0:6, 7umh:F, 7umh:Q, 7umh:f, 6uzv:F, 6uzv:6, 6uzv:f
27 6jeo:bF 141 151 0.2772 0.3617 0.3377 5.42e-22 6jeo:aF, 6jeo:cF, 6jeo:dF, 6k61:F, 6k61:f, 6tcl:F1, 6tcl:F2, 6tcl:F, 6tcl:FF, 7y3f:F
28 7a4p:F 165 157 0.3043 0.3394 0.3567 4.23e-20 6zzx:F, 6zzy:F
29 7bgi:F 165 157 0.2989 0.3333 0.3503 1.01e-19 7blx:F, 7d0j:F, 7dz7:F, 7dz8:F, 8h2u:F, 6ijj:F, 6ijo:F, 6jo5:F, 6jo6:F, 7r3k:F, 7wyi:F, 7wzn:F, 7zq9:F, 7zqc:F, 7zqd:F, 7zqd:F2
30 4l6v:F 125 76 0.1957 0.2880 0.4737 3.26e-17 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
31 8cmo:F 165 145 0.2663 0.2970 0.3379 5.63e-16
32 7s3d:F 124 147 0.2283 0.3387 0.2857 3.89e-15 7s3d:Q, 7s3d:f
33 7dwq:F 103 119 0.2228 0.3981 0.3445 9.12e-11
34 1aq3:A 129 65 0.0978 0.1395 0.2769 0.040 1aq3:C, 1aq4:A, 1aq4:C, 2b2d:A, 2b2d:B, 2b2d:C, 2b2e:A, 2b2e:B, 2b2e:C, 2b2g:A, 2b2g:B, 2b2g:C, 2bny:A, 2bny:B, 2bny:C, 2bq5:A, 2bq5:B, 2bq5:C, 2bs0:A, 2bs0:B, 2bs0:C, 2bs1:A, 2bs1:B, 2bs1:C, 2bu1:A, 2bu1:B, 2bu1:C, 2c4q:A, 2c4q:B, 2c4q:C, 2c4y:A, 2c4y:B, 2c4y:C, 2c4z:A, 2c4z:B, 2c4z:C, 2c50:A, 2c50:B, 2c50:C, 2c51:A, 2c51:B, 2c51:C, 2iz8:A, 2iz8:B, 2iz8:C, 2iz9:A, 2iz9:C, 2izm:A, 2izm:B, 2izm:C, 2izn:A, 2izn:B, 2izn:C, 5msf:A, 5msf:C, 6msf:A, 6msf:C, 7msf:A, 7msf:C, 5tc1:D, 5tc1:E, 5tc1:G, 5tc1:H, 1u1y:A, 1u1y:C, 1zdh:A, 1zdh:C, 1zdi:A, 1zdi:C, 1zdj:A, 1zdj:C, 1zdk:A, 1zdk:C, 1zse:A, 1zse:B
35 2ber:A 601 91 0.1359 0.0416 0.2747 3.6 2bzd:A, 2bzd:B, 2bzd:C, 1eus:A, 1euu:A, 1w8n:A, 1w8o:A, 1wcq:A, 1wcq:B, 1wcq:C
36 8p5d:SD0 216 39 0.0652 0.0556 0.3077 8.6 8p60:SD0, 8p60:RD0, 7qca:SD0
37 4c2v:B 281 143 0.1739 0.1139 0.2238 9.1 4b8l:A, 4b8m:A, 4b8m:B, 2bfy:A, 2bfy:B, 4c2v:A, 4c2w:A, 4c2w:B, 5eyk:A, 5eyk:B, 5k3y:A, 5k3y:B, 2vgo:A, 2vgo:B, 2vgp:A, 2vgp:B, 2vrx:A, 2vrx:B, 3ztx:A, 3ztx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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