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BioLiP
>protein
AKPANKLVIVTEKILLKKIAKIIDESGAKGYTVMNTGGKGSRNVRSSGQPNTSDIEANIKFEILTETREMAEEIADRVAV
KYFNDYAGIIYICSAEVLYGHTFCGPEGC

The query sequence (length=109) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7cyf:D 109 109 1.0000 1.0000 1.0000 1.78e-77 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
2 7r30:B 102 109 0.8991 0.9608 0.8991 6.35e-65 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
3 6ntb:C 104 98 0.5229 0.5481 0.5816 3.74e-39 6mm2:A, 6ntb:A, 6ntb:B
4 6mmo:A 91 103 0.4495 0.5385 0.4757 2.54e-28 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
5 5d4o:A 106 43 0.1468 0.1509 0.3721 0.15 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
6 5d4n:B 90 45 0.1468 0.1778 0.3556 0.15 5drk:C
7 7qqe:A 163 67 0.1468 0.0982 0.2388 1.1 7qqd:B, 7qqd:A
8 3dls:A 285 27 0.1101 0.0421 0.4444 1.3 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
9 4a7z:A 881 19 0.1101 0.0136 0.6316 1.3 4a7k:A, 4a7y:A
10 5ux5:A 963 66 0.2110 0.0239 0.3485 1.8 5ux5:B, 5ux5:C, 5ux5:D
11 8cbc:A 455 81 0.1927 0.0462 0.2593 2.5 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B
12 8rdj:C 1040 47 0.1284 0.0135 0.2979 2.6
13 4nae:A 219 38 0.1009 0.0502 0.2895 5.2 4nae:B
14 7bi6:A 829 26 0.1101 0.0145 0.4615 6.5 8a9i:A, 7bi9:A, 7z74:A, 7z75:A
15 7bi2:A 1021 26 0.1101 0.0118 0.4615 6.6
16 2ii6:A 393 34 0.1009 0.0280 0.3235 7.0 2c84:A, 2ex1:A, 2ihj:A, 2ihk:A, 2ihz:A, 2iib:A, 2iiq:A, 2iiq:B, 2ilv:A, 2iy7:A, 2iy8:A, 3s44:A, 8sv2:A
17 4b55:A 273 36 0.1284 0.0513 0.3889 7.2 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
18 6ucz:B 265 80 0.2110 0.0868 0.2875 8.9 6ucz:A
19 8etc:V 138 111 0.2752 0.2174 0.2703 9.1 8esq:V, 8esr:V, 8etg:V, 8eti:V, 8etj:V, 8eug:V, 8eui:V, 8eup:V

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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