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BioLiP
>protein
AKPANKLVIVTEKILLKKIAKIIDESGAKGYTVMNTGGKGDIEANIKFEILTETREMAEEIADRVAVKYFNDYAGIIYIC
SAEVLYGHTFCGPEGCSA

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r30:B 102 100 1.0000 0.9608 0.9800 5.41e-66 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
2 7cyf:D 109 109 0.9796 0.8807 0.8807 4.58e-63 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
3 6mmo:A 91 90 0.4898 0.5275 0.5333 4.01e-31 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
4 6ntb:C 104 98 0.4898 0.4615 0.4898 1.64e-27 6mm2:A, 6ntb:A, 6ntb:B
5 5d4n:B 90 86 0.2041 0.2222 0.2326 0.14 5drk:C
6 4b55:A 273 37 0.1633 0.0586 0.4324 0.18 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
7 5d4o:A 106 93 0.2245 0.2075 0.2366 0.39 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
8 5ux5:A 963 57 0.2347 0.0239 0.4035 0.81 5ux5:B, 5ux5:C, 5ux5:D
9 3dls:A 285 27 0.1224 0.0421 0.4444 0.82 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
10 4a7z:A 881 19 0.1224 0.0136 0.6316 0.98 4a7k:A, 4a7y:A
11 6m0w:A 1032 57 0.2041 0.0194 0.3509 2.6 6m0v:A, 6m0x:A
12 3zqj:D 921 71 0.1939 0.0206 0.2676 5.9 3zqj:B, 3zqj:E
13 1bgv:A 449 51 0.1429 0.0312 0.2745 7.0
14 6ql9:D 1765 54 0.2041 0.0113 0.3704 7.2 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F
15 7vw3:A 1052 61 0.2041 0.0190 0.3279 8.1 5axw:A, 5czz:A, 7el1:A, 7eni:A, 7enr:A, 8jft:A, 8jg9:A, 8jg9:D
16 3rpd:A 345 46 0.1735 0.0493 0.3696 8.3 3rpd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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