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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AKNVVLDHDGNLDDFVAMVLLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNNMNLPLFPIGKSAATAVNPFPK
EWRCLAKNMDDMPILNIPENVELWDKIKAENEKYEGQQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEEC
VIMGGAVDVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSPYVQRFGEQTNFLLSILVGTM
WAMCTHCELLRDGDGYYAWDALTAAYVVDQKVANVDPVPIDVVVDKQPNEGATVRTDAENYPLTFVARNPEAEFFLDMLL
RSARAC

The query sequence (length=326) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ff2:B 327 326 1.0000 0.9969 1.0000 0.0 3b9g:A, 3b9g:B, 3epw:A, 3epw:B, 3epx:A, 3epx:B, 2ff1:A, 2ff1:B, 2ff2:A, 1hoz:A, 1hoz:B, 1hp0:A, 1hp0:B, 1kic:A, 1kic:B, 1kie:A, 1kie:B, 1r4f:A, 1r4f:B
2 4i72:A 328 326 0.6810 0.6768 0.6810 1.40e-165 4i70:A, 4i71:A, 4i72:B, 4i73:A, 4i73:B, 4i73:C, 4i73:D, 4i74:A, 4i75:A, 4i75:B
3 2c40:A 302 323 0.3037 0.3278 0.3065 7.80e-40 2c40:B
4 3mkm:A 311 216 0.1871 0.1961 0.2824 2.04e-12 3b9x:A, 3b9x:B, 3b9x:D, 3mkm:B, 3mkm:C, 3mkm:D, 3mkn:A, 3mkn:B, 3mkn:C, 3mkn:D, 1q8f:A, 1q8f:B, 1q8f:C, 1q8f:D
5 3b9x:C 283 216 0.1840 0.2120 0.2778 2.89e-12
6 4wr2:A 308 225 0.1933 0.2045 0.2800 3.77e-12
7 3g5i:A 305 226 0.2178 0.2328 0.3142 1.30e-11 3g5i:B, 3g5i:C, 3g5i:D, 1yoe:A
8 2mas:A 313 303 0.2423 0.2524 0.2607 1.51e-11 2mas:B, 2mas:C, 2mas:D
9 1ezr:A 312 300 0.2270 0.2372 0.2467 2.71e-11 8ctm:A, 8ctm:B, 8ctm:C, 8ctm:D, 1ezr:B, 1ezr:C, 1ezr:D
10 5tsq:A 312 300 0.2209 0.2308 0.2400 1.88e-10
11 4kpn:A 318 140 0.1258 0.1289 0.2929 3.41e-08 4kpn:B, 4kpn:C, 4kpn:D, 4kpn:E, 4kpn:F, 4kpn:G, 4kpn:H
12 4kpo:A 317 195 0.1564 0.1609 0.2615 6.30e-08 4kpo:B, 6zk5:A, 6zk5:B
13 6ba0:A 312 296 0.2362 0.2468 0.2601 9.20e-08 6ba0:B, 6ba0:C, 6ba0:D
14 5mj7:A 322 209 0.1810 0.1832 0.2823 2.71e-07 5mj7:B
15 6zk3:A 319 85 0.0982 0.1003 0.3765 2.43e-06 6zk1:A, 6zk1:B, 6zk1:C, 6zk1:D, 6zk2:A, 6zk2:B, 6zk2:C, 6zk2:D, 6zk3:B, 6zk3:C, 6zk3:D, 6zk3:E, 6zk3:F, 6zk4:A, 6zk4:B, 6zk4:C, 6zk4:D
16 6ba1:A 316 223 0.1810 0.1867 0.2646 5.47e-06 6ba1:B, 6ba1:C, 6ba1:D, 6ba1:E, 6ba1:F, 6ba1:G, 6ba1:H, 6ba1:I, 6ba1:J, 6ba1:K, 6ba1:L, 6ba1:M, 6ba1:N, 6ba1:O, 6ba1:P, 6ba1:Q, 6ba1:R
17 8qnd:A 297 122 0.1012 0.1111 0.2705 1.22e-04 8qnd:C, 8qnd:B, 8qnd:D
18 8oi7:A 346 250 0.1779 0.1676 0.2320 0.049 8oi7:B, 8oi9:A, 8oi9:B, 8oia:A, 8oia:B, 8oia:C, 8oia:D, 8oib:A, 8oib:B, 8oib:C, 8oib:D, 8oic:A, 8oic:B, 8oic:C, 8oic:D, 8oic:E, 8oic:F, 8oic:G, 8oic:H
19 3t8i:A 306 199 0.1564 0.1667 0.2563 0.12 3t8i:B, 3t8i:C, 3t8i:D
20 8db6:B 304 72 0.0675 0.0724 0.3056 0.41 8db6:A, 8db6:C, 8db6:D, 8db7:B, 8db7:A, 8db7:C, 8db7:D, 8db8:B, 8db8:A, 8db8:C, 8db8:D, 8db9:A, 8db9:B, 8db9:C, 8db9:D
21 3gvh:A 318 162 0.1319 0.1352 0.2654 0.63 3gvh:B, 3gvh:C, 3gvh:D, 3gvi:A, 3gvi:B, 3gvi:C, 3gvi:D, 3gvi:E, 3gvi:F
22 8rih:B 333 86 0.0583 0.0571 0.2209 1.6 8rih:A
23 7awt:G 907 64 0.0613 0.0221 0.3125 2.1 7nyr:G, 7nyu:G, 7nyv:G, 7nz1:G, 7p61:G, 7p62:G, 7p63:G, 7p64:G, 7p69:G, 7p7c:G, 7p7e:G, 7p7j:G, 7p7k:G, 7p7l:G, 7p7m:G, 7z7r:G, 7z7s:G, 7z7t:G, 7z7v:G, 7z80:G, 7z83:G, 7z84:G, 7zc5:G, 7zci:G
24 6bdo:D 395 99 0.0828 0.0684 0.2727 2.3 6bdo:B, 6bdo:A, 6bdo:C, 5kmp:A, 5kmp:B, 5kmq:A, 5kmq:B, 5kmq:C, 5kmq:D, 5kmr:B, 5kmr:A, 5kmr:C, 5kmr:D, 5kms:A, 5kms:B, 5kms:C, 5kms:D, 4nwz:A, 4nwz:B, 4nwz:C, 4nwz:D, 5wed:B, 5wed:A, 5wed:C, 5wed:D
25 8cro:C 390 22 0.0399 0.0333 0.5909 4.4
26 6wb6:A 653 65 0.0521 0.0260 0.2615 5.4 6wb6:B
27 2xvk:A 944 49 0.0583 0.0201 0.3878 8.3 2xvl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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