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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AKKDKAQQVADVSHLLSTSAGFVIFDYTSMSAIEATSIRKKLFKNGSKIKVIKNNILRRALKAGKFEGIDETAIKGKLAV
AVGVNEIVETLKAVDGVVKAKEAMNFVCGYFDFNSADLEKIAK

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pah:g 126 126 1.0000 0.9762 0.9762 3.94e-82 7ood:g, 7p6z:g, 7pai:g, 7paj:g, 7pak:g, 7pal:g, 7pam:g, 7pan:g, 7pao:g, 7paq:g, 7par:g, 7pas:g, 7pat:g, 7pau:g, 7ph9:g, 7pha:g, 7phb:g, 7phc:g, 7pi8:g, 7pi9:g, 7pia:g, 7pib:g, 7pic:g, 7pio:g, 7pip:g, 7piq:g, 7pir:g, 7pis:g, 7pit:g
2 8uu8:I 129 117 0.3333 0.3178 0.3504 1.33e-13
3 3j9w:BJ 123 113 0.2358 0.2358 0.2566 3.35e-08 7as8:L, 7as9:L, 5njt:b, 7o5b:p, 7ope:L, 7qgu:H, 7qh4:H, 6tnn:b, 6tpq:b
4 6dzi:I 126 125 0.3252 0.3175 0.3200 1.40e-07 6dzp:I, 8fr8:R, 8kab:I, 5o60:I, 5o61:I, 7s0s:J, 8v9j:I, 8v9k:I, 8v9l:I, 7xam:I, 8xz3:I, 7y41:I, 5zeb:I, 5zep:I, 5zet:I
5 1zav:A 178 132 0.2927 0.2022 0.2727 9.76e-06 1zaw:A, 1zax:A
6 5a9z:AI 153 59 0.1545 0.1242 0.3220 0.001 5aa0:AI, 6gsl:38, 5hau:1J, 5hau:2J, 5imq:2, 5imr:2, 5j8b:J, 6qnq:38, 4v6f:DY, 4v7j:AJ, 4v7j:BJ, 4v7k:AJ, 4v7k:BJ, 4w2e:J, 4wpo:AK, 4wpo:CK, 4wqf:AK, 4wqf:CK, 4wqu:AK, 4wqu:CK, 4wqy:AK, 4wqy:CK, 5zlu:e
7 3j9z:LD 164 65 0.1626 0.1220 0.3077 0.001 7abz:H, 7ac7:H, 5ady:7, 5afi:5, 7bl5:e, 6bu8:10, 7bv8:I, 6by1:C5, 6c4i:I, 7cpj:5, 6dnc:L, 8fiz:DG, 8fzd:I, 8fze:I, 8fzf:I, 8fzg:I, 8fzh:I, 8fzi:I, 8fzj:I, 5gad:I, 5gae:I, 5gaf:I, 5gag:I, 5gah:I, 6gwt:5, 6gxm:5, 6gxn:5, 6gxo:5, 6gxp:5, 5h5u:I, 6hrm:H, 6i0y:5, 5iqr:H, 5it8:DI, 5j5b:DI, 3j7z:5, 5j7l:DI, 5j88:DI, 5j8a:DI, 3j9y:5, 5j91:DI, 3ja1:LJ, 3jcj:e, 5jc9:DI, 7jsz:h, 7jt2:h, 7jt3:h, 7k50:h, 7k51:h, 7k52:h, 7k53:h, 7k54:h, 7k55:h, 5kcr:1J, 5kcs:1J, 5kps:H, 5kpv:G, 5kpw:G, 5kpx:G, 5l3p:J, 6lkq:n, 7lv0:h, 7m5d:H, 5mdv:H, 5mdw:H, 5mdy:H, 5mdz:H, 7n1p:LJ, 7n2c:LJ, 7n2v:LJ, 5nco:I, 5np6:3, 7nwt:H, 5o2r:5, 6o9k:G, 7oj0:5, 8peg:j, 8phj:5, 7pjs:5, 7pjt:5, 7pju:5, 7pjv:5, 7pjw:5, 7pjx:5, 7pjy:5, 7pjz:5, 8pkl:j, 6q97:H, 6q98:H, 6q9a:H, 6s0k:I, 7sa4:H, 7sso:h, 7st2:h, 7tos:L10, 5u9f:10, 5u9g:10, 7ug7:LJ, 8upo:9, 8upr:9, 8uql:9, 8uqm:9, 8uqp:9, 8ur0:9, 8urh:9, 8uri:9, 8urx:9, 8ury:9, 4uy8:5, 5uyk:10, 5uyl:10, 5uym:10, 5uyn:10, 5uyp:10, 5uyq:10, 4v6n:AJ, 4v6o:BJ, 4v6p:BJ, 4v6q:BJ, 4v6r:BJ, 4v6s:AJ, 4v6v:BJ, 4v7b:B5, 4v7c:BJ, 4v7d:AJ, 4v85:BH, 4v89:BH, 4v9o:A5, 4v9o:C5, 4v9o:E5, 4v9p:A5, 4v9p:E5, 8vs9:L10, 8vsa:L10, 6vu3:9, 6vyq:9, 6vyr:9, 6vys:9, 6vzj:9, 5wdt:5, 6wd0:h, 6wd1:h, 6wd2:h, 6wd3:h, 6wd4:h, 6wd5:h, 6wd6:h, 6wd7:h, 6wd8:h, 6wd9:h, 6wda:h, 6wdb:h, 6wdc:h, 6wdd:h, 6wde:h, 6wdf:h, 6wdg:h, 6wdh:h, 6wdi:h, 6wdj:h, 6wdk:h, 6wdl:h, 6wdm:h, 5we4:5, 5we6:5, 5wf0:5, 5wfk:5, 5wfs:5, 6wnt:h, 6wnv:h, 6wnw:h, 6x6t:9, 6x7f:9, 6x7k:9, 6x9q:9, 6xdq:9, 6xdr:9, 6xgf:9, 6xii:9, 6xij:9, 6xz7:H, 6xza:H2, 6xzb:H2, 4ybb:DI, 6ysr:5, 6yss:5, 6yst:5, 6ysu:5, 6ztj:BI
8 7unv:I 118 79 0.1707 0.1780 0.2658 0.009 7unr:I, 7unu:I, 7unw:I
9 8fmw:AJ 162 75 0.1382 0.1049 0.2267 0.038 8fn2:J
10 6ywe:f 245 38 0.0894 0.0449 0.2895 0.98 6yws:f, 6ywv:f, 6ywx:f, 6ywy:f
11 6rk0:A 214 35 0.1057 0.0607 0.3714 1.00 6rk0:B
12 5xut:A 1217 33 0.0976 0.0099 0.3636 1.1 5id6:A, 6nm9:B, 6nm9:D, 6nma:B, 6nmc:A, 6nmd:A, 6nme:A, 6omv:B, 5xus:A, 5xuu:A, 5xuz:A, 5xuz:E
13 7mqa:LM 2041 87 0.2114 0.0127 0.2989 1.4
14 7mq9:LM 2005 87 0.2114 0.0130 0.2989 1.4
15 5oql:Z 639 54 0.1463 0.0282 0.3333 2.0
16 6rxt:CI 822 54 0.1463 0.0219 0.3333 2.1 6rxu:CI, 6rxv:CI, 6rxx:CI, 6rxy:CI, 6rxz:CI
17 2xiq:A 714 90 0.2439 0.0420 0.3333 3.2 8dyj:B, 8dyl:B, 2xij:A, 2xiq:B
18 5dpd:A 511 22 0.0732 0.0176 0.4091 8.9 5dnk:A, 5dnk:B, 5dpd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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