Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AKHATPLLDQLQSGPWPSFVADIKEEAERRHSNQDNVEYQIPVDVCDDLLGILELKYSDGTTHWKHGGIVGVFGYGGGVI
GRYCDQPQMFPGVAHFHTVRVAQPAGMYYTTDFLKQLCDLWDMRGSGLTNMHGATGDIVLLGTTTPQLEEFYFELTHKMN
NDLGGSGSNLRTPASCLGDSRCEWACYDAQELCYQMTQEYQDELHRPAFPYKFKFKFDGCPNGCVASIARSDMSFIGTWR
DDIRIDQEAVAAYVGGEIQPNGGAHSGKDWGAFDIQKEVIDLCPTECMWMEDGKLQINNRECTRCMHCLNVMPRALRIGN
DRGLSILVGAKAPILDGAQMGSLLVPFIKVEDPYDEIKEIIEGIWEWWMEEGKNRERLGELIKRQGLAKAIAAVGLTPVP
QHVMEPRHNPYIFWKEKDVEGGWDRDIADYRKHHQR

The query sequence (length=436) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2xsj:A 436 436 1.0000 1.0000 1.0000 0.0 2xsj:D
2 3or1:A 435 435 0.7294 0.7310 0.7310 0.0 3or1:D, 3or2:A, 3or2:D
3 2v4j:A 436 436 0.7317 0.7317 0.7317 0.0 2v4j:D
4 3mm5:A 417 418 0.4954 0.5180 0.5167 1.27e-142 3mm5:D, 3mm6:A, 3mm6:D, 3mm7:A, 3mm7:D, 3mm8:A, 3mm8:D, 3mm9:A, 3mm9:D, 3mma:A, 3mma:D, 3mmb:A, 3mmb:D, 3mmc:A, 3mmc:D
5 7np8:B 620 302 0.1628 0.1145 0.2351 2.75e-10 7np8:A, 7np8:C, 7np8:D
6 7npa:A 618 312 0.1697 0.1197 0.2372 1.38e-09 7npa:B, 7npa:C, 7npa:D, 7npa:E, 7npa:F, 7npa:G, 7npa:H, 7npa:I, 7npa:J, 7npa:K, 7npa:L, 7npa:M, 7npa:N, 7npa:O, 7npa:P
7 3or1:B 385 268 0.1376 0.1558 0.2239 1.08e-08 3or1:E, 3or2:B, 3or2:E
8 2v4j:B 380 342 0.1674 0.1921 0.2135 1.54e-08 2v4j:E
9 3mm5:B 363 344 0.1560 0.1873 0.1977 1.60e-07 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
10 7lnu:B 261 34 0.0321 0.0536 0.4118 0.13 7lnt:B, 7lnw:A, 7lnw:B, 7lnx:B, 7n9d:A, 7n9d:B
11 7lnu:A 239 34 0.0321 0.0586 0.4118 0.14 7lnt:A, 7lnx:A
12 1f8f:A 362 108 0.0711 0.0856 0.2870 0.15
13 3hkz:D 264 44 0.0321 0.0530 0.3182 1.00 4ayb:D, 3hkz:O, 2pa8:D, 2pmz:D, 2pmz:S, 4v8s:AS, 4v8s:BD, 2waq:D, 2wb1:D, 2wb1:S, 2y0s:D, 2y0s:S
14 2v2k:A 104 37 0.0298 0.1250 0.3514 5.7 2v2k:B
15 8fnv:A 770 59 0.0413 0.0234 0.3051 6.5 8fnv:B, 8fnv:C, 8fnv:D, 8fnv:E, 8fnv:F, 8fnv:G, 8fnv:H, 8fnv:I, 8fnv:J, 8fnv:K, 8fnv:L, 8fnw:A, 8fnw:B, 8fnw:C, 8fnw:D, 8fnw:E, 8fnw:F, 8fnw:G, 8fnw:H, 8fnw:I, 8fnw:J, 8fnw:K, 8fnw:L
16 2zvs:A 81 24 0.0229 0.1235 0.4167 6.7 2zvs:B, 2zvs:C
17 1h98:A 77 37 0.0229 0.1299 0.2703 6.9
18 4a3q:A 356 35 0.0298 0.0365 0.3714 9.4 4a3q:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218