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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AKGTFAKAMPHVFSDEGGYVDHPKDPGGATNMGITLATLSAWEGRKVSKAEVKALTKTKATDIYRENYWNKVAGDDLPAG
VDHATLDFAIHSGPARAVKMLQKVVGVDQDGVIGAKTLAAVRKMAADRIINELCDARLAWLKGLGTFSTFGKGWTSRVSR
VRSRALAFSRDSAL

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dnp:A 174 174 1.0000 1.0000 1.0000 3.10e-127
2 6v40:A 193 132 0.2529 0.2280 0.3333 4.45e-12 6v40:B, 6v40:C, 6v40:D
3 6rqc:A 494 60 0.1149 0.0405 0.3333 0.13 7mca:A, 7tjf:A, 7tjh:A, 7tji:A, 7tjj:A, 7tjk:A, 5v8f:A, 6wgc:A, 6wgg:A, 6wgi:A, 5zr1:A
4 5tc1:M 330 61 0.1207 0.0636 0.3443 0.17
5 5hud:D 457 42 0.0920 0.0350 0.3810 0.44 5huc:A, 5hud:A, 5hud:B, 5hud:C, 5hue:A
6 6vzy:A 464 65 0.0920 0.0345 0.2462 1.1 8e8w:A, 8e8w:B, 6m9r:A, 6m9r:B, 6m9s:A, 6m9s:B, 6m9s:C, 6m9s:D, 6vzy:B
7 7ajo:A 492 34 0.0632 0.0224 0.3235 1.8 7ajx:A, 7ajz:A
8 3o9z:A 310 39 0.0977 0.0548 0.4359 4.5 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
9 5zmw:A 1000 127 0.1667 0.0290 0.2283 5.4 5a3q:A, 5a3r:A, 5a3s:A, 5a3s:B, 2agv:A, 2agv:B, 3ar2:A, 3ar3:A, 3ar4:A, 3ar5:A, 3ar6:A, 3ar7:A, 3ar8:A, 3ar9:A, 3b9b:A, 3b9r:A, 3b9r:B, 3ba6:A, 4bew:A, 4bew:B, 2by4:A, 2c88:A, 2c8k:A, 2c8l:A, 2c9m:A, 2c9m:B, 2dqs:A, 2ear:A, 2eat:A, 2eau:A, 3fgo:A, 3fgo:B, 3fpb:A, 3fps:A, 4h1w:A, 6hef:A, 1iwo:A, 1iwo:B, 4j2t:A, 3j7t:A, 4kyt:A, 3n5k:A, 3n5k:B, 3n8g:A, 3nal:A, 3nam:A, 3nan:A, 4nab:A, 5ncq:A, 2o9j:A, 2oa0:A, 8owa:A, 8owl:A, 6rb2:A, 1su4:A, 1t5s:A, 1t5t:A, 3tlm:A, 4uu0:A, 4uu1:A, 1vfp:A, 1vfp:B, 3w5a:A, 3w5a:B, 3w5b:A, 1wpg:A, 1wpg:B, 1wpg:C, 1wpg:D, 5xa7:A, 5xa8:A, 5xa9:A, 5xaa:A, 4xou:A, 1xp5:A, 6yaa:A, 4ycl:A, 4ycm:A, 4ycn:A, 2yfy:A, 6yso:A, 6yso:B, 2zbd:A, 2zbe:A, 2zbe:B, 2zbf:A, 2zbg:A
10 4ecg:A 368 32 0.0690 0.0326 0.3750 5.7
11 1b23:P 405 48 0.0977 0.0420 0.3542 5.7 2c77:A, 2c78:A, 1eft:A, 1exm:A, 4h9g:A, 1ha3:A, 4lbv:A, 4lbw:A, 4lby:A, 4lbz:A, 4lc0:A, 1mj1:A, 1ob5:A, 1ob5:C, 1ob5:E, 2p8w:S, 2p8x:S, 2p8z:S, 1ttt:A, 1ttt:B, 1ttt:C, 1tui:A, 1tui:B, 1tui:C, 4v5l:AZ, 4v8q:BZ
12 6sga:F2 915 50 0.0977 0.0186 0.3400 5.8 7pua:F2, 6sgb:F2
13 4v5p:AZ 385 47 0.0977 0.0442 0.3617 7.0 1ha3:B, 4v5g:AZ, 4v5g:CZ, 4v5p:CZ, 4v5q:AZ, 4v5q:CZ, 4v5r:AZ, 4v5r:CZ, 4v5s:AZ, 4v5s:CZ, 4v68:AZ

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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