Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AKGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lqi:C 181 62 0.9688 0.3425 1.0000 5.28e-43 2kyu:A, 3lqh:A, 3lqi:A, 3lqi:B, 3lqj:A, 3lqj:B, 7zey:B, 7zez:B
2 6mlc:C 85 42 0.2656 0.2000 0.4048 1.59e-05 6mlc:A, 6mlc:B, 6mlc:D
3 6o7g:B 60 37 0.2344 0.2500 0.4054 1.71e-04 8u2y:B
4 2k16:A 75 62 0.2969 0.2533 0.3065 0.022 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
5 5yc3:A 60 55 0.2344 0.2500 0.2727 0.061 5yc4:A
6 2ma5:A 61 62 0.3125 0.3279 0.3226 0.067
7 1wem:A 76 41 0.2188 0.1842 0.3415 0.10 4l7x:A, 2m3h:A
8 5c11:A 52 41 0.2500 0.3077 0.3902 0.13 3gl6:A, 2kgg:A, 2kgi:A
9 5tab:A 53 48 0.2656 0.3208 0.3542 0.21
10 1wep:A 79 35 0.1719 0.1392 0.3143 0.27
11 5z28:B 98 72 0.3438 0.2245 0.3056 0.31 5z28:A
12 5xfr:A 309 25 0.1719 0.0356 0.4400 0.36 5xfr:B
13 1wee:A 72 53 0.2344 0.2083 0.2830 0.56
14 6j2p:A 98 34 0.1406 0.0918 0.2647 0.71 6j2p:B, 6j2p:D, 6j2p:C
15 5tbn:A 57 42 0.2500 0.2807 0.3810 0.80
16 3o70:A 55 40 0.1875 0.2182 0.3000 1.1 3o7a:A
17 5znp:B 186 42 0.2188 0.0753 0.3333 1.3 5znp:A, 5znr:A, 5znr:B
18 5z8l:A 204 57 0.2656 0.0833 0.2982 1.4 5z8n:A, 5z8n:B, 5z8n:C
19 5oqd:C 192 25 0.1406 0.0469 0.3600 1.7 5oqd:B, 5oqd:A, 5oqd:D, 5oqd:E, 5oqd:F
20 2xb1:C 97 29 0.1094 0.0722 0.2414 1.8 4up0:A, 4up5:A, 2xb1:A
21 5tdr:A 70 28 0.1562 0.1429 0.3571 1.8 5tdw:A
22 2m85:A 65 24 0.1562 0.1538 0.4167 1.9
23 4bbq:A 111 39 0.1875 0.1081 0.3077 2.0 4bbq:B
24 5xfo:A 315 25 0.1406 0.0286 0.3600 2.4 8h43:A, 8h43:B, 8h43:C, 4hcz:A, 4hcz:B, 7lky:B, 7lky:H, 7lky:A, 7lky:C, 7lky:D, 7lky:E, 7lky:F, 7lky:G, 6wat:AA, 6wat:AC, 6wat:BA, 6wat:BC, 6wat:CA, 6wat:CC, 6wat:DA, 6wat:DC, 6wat:EC, 6wat:EA, 6wat:FA, 6wat:FC, 6wat:GA, 6wat:GC, 6wat:HA, 6wat:HC, 6wat:IA, 6wat:IC, 6wat:JA, 6wat:JC, 6wat:KA, 6wat:KC, 6wat:OC, 6wat:LA, 6wat:LC, 6wat:MA, 6wat:MC, 6wat:NA, 6wat:NC, 6wat:OA, 6wav:A, 6wav:C, 6wav:B, 6wav:D, 5xfn:A, 5xfp:B, 5xfp:A, 5xfp:E, 5xfq:A, 5xfq:B
25 5vab:A 54 54 0.2500 0.2963 0.2963 2.8
26 5y20:A 52 44 0.1875 0.2308 0.2727 3.0
27 8khq:A 700 52 0.2344 0.0214 0.2885 4.8 8khq:B, 8khq:C, 8khq:D
28 6knb:B 1120 24 0.1406 0.0080 0.3750 5.5 6knc:B
29 1we9:A 64 59 0.2188 0.2188 0.2373 5.9
30 2ysm:A 111 58 0.2500 0.1441 0.2759 6.3
31 2ct2:A 88 21 0.0938 0.0682 0.2857 6.6 5fey:A, 5fey:B
32 8f8y:B 433 40 0.1875 0.0277 0.3000 8.3 8f8y:A, 8f8z:A, 8f8z:B, 3kqi:A, 7m10:A, 3pu3:A, 3pu3:B, 3pu8:B, 3pu8:A, 3pua:A, 3pus:A, 3pus:B
33 7pog:A 2382 18 0.1719 0.0046 0.6111 8.4 4dmw:A, 3ho6:A, 3ho6:B, 4r04:A, 3srz:A, 3ss1:A, 7u2p:A, 7uby:B, 7uby:A, 5uqk:A, 5uql:A
34 8e4n:A 901 35 0.1562 0.0111 0.2857 9.3 9b6j:A, 9b6j:B, 9b6j:C, 9b6j:D, 8e4l:A, 8e4l:B, 8e4l:C, 8e4l:D, 8e4m:A, 8e4m:B, 8e4m:C, 8e4m:D, 8e4n:B, 8e4n:C, 8e4n:D, 8e4o:A, 8e4o:D, 8e4o:B, 8e4o:C, 8e4p:A, 8e4p:B, 8e4p:C, 8e4p:D
35 9b6h:B 934 35 0.1562 0.0107 0.2857 9.3 9b6d:A, 9b6d:B, 9b6d:C, 9b6d:D, 9b6e:B, 9b6e:A, 9b6e:C, 9b6e:D, 9b6f:A, 9b6f:B, 9b6f:C, 9b6f:D, 9b6g:A, 9b6g:B, 9b6g:C, 9b6g:D, 9b6h:A, 9b6h:C, 9b6h:D, 9b6k:A, 9b6k:B, 9b6k:C, 9b6k:D, 7wrb:A, 7wrb:B, 7wrb:C, 7wrb:D, 7wrc:A, 7wrc:B, 7wrc:C, 7wrc:D, 7wrd:A, 7wrd:B, 7wrd:C, 7wrd:D, 7wre:A, 7wre:B, 7wre:C, 7wre:D, 7wrf:A, 7wrf:B, 7wrf:C, 7wrf:D
36 6o72:A 858 35 0.1562 0.0117 0.2857 9.5 6o72:B, 6o72:C, 6o72:D
37 6nr2:A 859 35 0.1562 0.0116 0.2857 9.5 6nr2:B, 6nr2:C, 6nr2:D, 6nr3:A, 6nr3:B, 6nr3:C, 6nr3:D, 6o6a:A, 6o6a:B, 6o6a:C, 6o6a:D, 6o6r:A, 6o6r:B, 6o6r:C, 6o6r:D
38 6o77:A 872 35 0.1562 0.0115 0.2857 9.5 9b6i:A, 9b6i:B, 9b6i:C, 9b6i:D, 6o77:D, 6o77:B, 6o77:C
39 1wew:A 78 35 0.2031 0.1667 0.3714 9.6
40 4lk9:A 126 31 0.1719 0.0873 0.3548 9.8 5b75:A, 5b76:A, 5b77:A, 5b78:A, 4ljn:A, 4lka:A, 4llb:A, 4llb:B, 2ln0:A, 6lsb:A, 3v43:A
41 6wxk:B 51 29 0.1250 0.1569 0.2759 9.8 6wxk:A, 6wxk:C, 6wxk:D, 6wxk:E

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218