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BioLiP
>protein
AKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALI
HTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3sfe:C 139 136 0.9044 0.8849 0.9044 1.29e-89 3abv:C, 3ae1:C, 3ae2:C, 3ae3:C, 3ae4:C, 3ae5:C, 3ae6:C, 3ae7:C, 3ae8:C, 3ae9:C, 3aea:C, 3aeb:C, 3aec:C, 3aed:C, 3aee:C, 3aef:C, 3aeg:C, 8gs8:C, 3sfd:C, 4ytp:C, 4yxd:C, 1zoy:C, 1zp0:C
2 2wqy:C 140 136 0.7279 0.7071 0.7279 2.29e-71 2fbw:C, 2fbw:P, 2h88:C, 2h88:P, 2h89:C, 6myo:C, 6myp:C, 6myq:C, 6myr:C, 6mys:C, 6myt:C, 6myu:C, 2wqy:P, 1yq3:C, 1yq4:C
3 4ysx:G 155 118 0.3015 0.2645 0.3475 7.77e-22 5c2t:C, 5c2t:G, 5c3j:C, 5c3j:G, 3vr8:C, 3vr8:G, 3vr9:C, 3vr9:G, 3vra:C, 3vra:G, 3vrb:C, 3vrb:G, 4ysx:C, 4ysy:C, 4ysy:G, 4ysz:C, 4ysz:G, 4yt0:C, 4yt0:G, 4ytm:C, 4ytm:G, 4ytn:C, 4ytn:G
4 2acz:C 129 100 0.1912 0.2016 0.2600 2.58e-04 7jz2:C, 7jz2:G, 7jz2:K, 1nek:C, 1nen:C, 2wdq:C, 2wdq:G, 2wdq:K, 2wdr:C, 2wdr:G, 2wdr:K, 2wdv:C, 2wdv:G, 2wdv:K, 2wp9:C, 2wp9:G, 2wp9:K, 2ws3:C, 2ws3:G, 2ws3:K, 2wu2:C, 2wu2:G, 2wu2:K, 2wu5:C, 2wu5:G, 2wu5:K, 6wu6:C, 6wu6:G, 6wu6:K
5 2jal:B 444 31 0.0809 0.0248 0.3548 0.65 2cbu:A, 2cbu:B, 2cbv:A, 2cbv:B, 2ces:A, 2ces:B, 2cet:A, 2cet:B, 2j75:A, 2j75:B, 2j77:A, 2j77:B, 2j78:A, 2j78:B, 2j79:A, 2j79:B, 2j7b:A, 2j7b:B, 2j7c:A, 2j7c:B, 2j7d:A, 2j7d:B, 2j7e:A, 2j7e:B, 2j7f:A, 2j7f:B, 2j7g:A, 2j7g:B, 2j7h:A, 2j7h:B, 2jal:A, 5n6s:A, 5n6s:B, 5n6s:C, 5n6s:D, 5n6t:A, 5n6t:B, 1oif:A, 1oif:B, 1oim:A, 1oim:B, 1oin:A, 1oin:B, 5oss:B, 1uz1:A, 1uz1:B, 2vrj:A, 2vrj:B, 1w3j:A, 1w3j:B, 2wbg:A, 2wbg:B, 2wbg:C, 2wbg:D, 2wc3:A, 2wc3:B, 2wc3:C, 2wc3:D, 2wc4:A, 2wc4:B, 2wc4:C, 2wc4:D
6 3go9:A 458 33 0.0956 0.0284 0.3939 0.75
7 6nmx:A 350 24 0.0588 0.0229 0.3333 2.2 6cgq:A, 6cgq:B, 6nmx:B, 6nmx:C, 6nmx:D
8 3gnr:A 478 22 0.0588 0.0167 0.3636 2.8 3wba:A, 3wbe:A
9 5tu0:A 385 57 0.1250 0.0442 0.2982 3.5
10 5van:A 861 18 0.0588 0.0093 0.4444 8.5 6nfj:A, 6nfj:D, 5vaq:A
11 3wq5:A 475 29 0.0809 0.0232 0.3793 8.9 3wq5:B, 3wq6:A, 3wq6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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