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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AKDPMRVLKYAILGLLRKGELSGYDITSYFKEELGQFWSAKHSQIYPELKKLTDEGFITFRKKMYTLTDSGKQELHDWLI
RHQPIPETVKDEFMLKAYFISSLSRQEASDLFTDQLLKRKAKLSDLQGSYEKLMASAEPMSFSSPDFGHYLVLTKALERE
KNYVSWLESILAMIDED

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5x11:E 181 181 0.9718 0.9503 0.9503 6.01e-123 5x11:A, 5x11:B, 5x11:D, 5x11:C, 5x11:F, 5x11:H, 5x14:A
2 5z7b:B 197 37 0.1017 0.0914 0.4865 6.08e-05 6lg2:A, 6lg2:B, 5z7b:A
3 5ven:A 382 66 0.1017 0.0471 0.2727 2.4 5ven:B, 5veo:A
4 8ffz:B 905 105 0.1638 0.0320 0.2762 3.9
5 1iom:A 374 40 0.0791 0.0374 0.3500 5.3 1ixe:A, 1ixe:B, 1ixe:C, 1ixe:D
6 8dau:G 475 47 0.0847 0.0316 0.3191 6.3 8dar:G, 8das:G, 8dat:G, 8dav:G, 8daw:G, 6jwh:A, 6jwi:A, 6jwi:E, 6jwj:A, 6oa9:G
7 4lt6:A 467 55 0.0960 0.0364 0.3091 6.3 4lt6:B
8 2fkz:A 155 33 0.0678 0.0774 0.3636 6.5 2fkz:B, 2fkz:D, 2fkz:C, 2fkz:E, 2fkz:F, 2fkz:G, 2fkz:H, 2fl0:A, 2fl0:F, 2fl0:B, 2fl0:D, 2fl0:C, 2fl0:E, 2fl0:G, 2fl0:H, 1sof:A, 1sof:B, 1sof:C, 1sof:D, 1sof:E, 1sof:F, 1sof:G, 1sof:H
9 3eh8:A 254 60 0.1299 0.0906 0.3833 8.3 3eh8:D, 3eh8:G, 1p8k:Z, 2qoj:Z
10 6y7f:B 256 31 0.0621 0.0430 0.3548 9.6 6y7f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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