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BioLiP
>protein
AKDCKRESNTFPGICITKPPCRKACIREKFTDGHCSKILRRCLCTKP

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6b55:G 48 47 0.9149 0.8958 0.9149 5.00e-26 4cqk:A, 4cqk:C, 4cqk:B, 4cqk:D, 4cqk:E, 4cqk:F, 4cqk:G, 4cqk:H, 4cqk:I, 4cqk:J, 4cqk:K, 4cqk:L, 4cqk:M, 4cqk:N, 5kk4:B, 5kk4:C, 5kk4:D, 5kk4:E, 5kk4:F, 5vyp:A, 5vyp:B, 5vyp:C, 5vyp:T, 5vyp:D, 5vyp:E, 5vyp:G, 5vyp:F, 5vyp:H, 5vyp:I, 5vyp:J, 5vyp:K, 5vyp:L, 5vyp:Q, 5vyp:M, 5vyp:N, 5vyp:O, 5vyp:P, 5vyp:R, 5vyp:S, 5vyp:U, 5vyp:V, 5vyp:W, 5vyp:X
2 6mry:J 48 46 0.8298 0.8125 0.8478 9.14e-24 6mry:F, 6mry:I, 6mry:G, 6mry:H, 6mry:K
3 6lcq:A 54 48 0.3404 0.2963 0.3333 4.57e-04
4 2gfa:B 110 33 0.1702 0.0727 0.2424 0.50 5d6y:A, 5d6y:D, 5d6y:B, 5d6y:C, 2gfa:A, 2qqs:A, 2qqs:B, 5var:A
5 6idv:A 425 13 0.2128 0.0235 0.7692 0.82 6idv:B
6 8uha:V 550 33 0.2979 0.0255 0.4242 2.7 8uhd:V
7 8rbx:v 451 33 0.2979 0.0310 0.4242 2.8
8 5icc:A 352 18 0.1702 0.0227 0.4444 7.2 5ice:A, 5icf:A
9 8txz:A 858 11 0.1702 0.0093 0.7273 8.7
10 8tzc:A 872 11 0.1702 0.0092 0.7273 8.7
11 8tzg:A 906 11 0.1702 0.0088 0.7273 8.7
12 8tzb:A 920 11 0.1702 0.0087 0.7273 8.7
13 8tyq:A 957 11 0.1702 0.0084 0.7273 8.7 8tze:A
14 6vno:A 1084 11 0.1702 0.0074 0.7273 8.7 6vp6:A
15 8smc:C 1084 11 0.1702 0.0074 0.7273 9.1
16 8fo9:F 2289 11 0.1702 0.0035 0.7273 9.5 9c61:A, 9c61:B, 8fo2:E, 8fo7:C, 8fo8:C, 8fo8:E, 8fo9:E, 7lht:A, 7lht:B, 7lhw:A, 7li3:A, 7li4:A, 6oje:A, 6oje:B, 6ojf:A, 6ojf:B, 7thy:A, 7thz:A, 6xaf:A, 6xaf:B, 2zej:B
17 8u7h:C 1111 11 0.1702 0.0072 0.7273 9.6
18 8tzf:A 1589 11 0.1702 0.0050 0.7273 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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