Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVI
AELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1nxj:A 156 156 1.0000 1.0000 1.0000 6.25e-109 1nxj:B, 1nxj:C
2 2yjv:C 158 149 0.4359 0.4304 0.4564 1.35e-38
3 3noj:A 235 102 0.1859 0.1234 0.2843 3.52e-04
4 4d61:h 436 55 0.1282 0.0459 0.3636 0.84 5a8l:Q, 6d90:jj, 6hcf:j1, 6hcm:j1, 6ip8:zw, 3j5y:A, 3jag:ii, 3jah:ii, 3jai:ii, 5lzt:ii, 5lzu:ii, 5lzv:ii, 7nwh:ii, 7o80:By, 6p5n:Aq, 8scb:ii, 6zme:CH
5 3e1y:A 380 55 0.1282 0.0526 0.3636 0.97 3e1y:B, 6xa1:j
6 4dm9:A 223 82 0.1154 0.0807 0.2195 2.1 4dm9:B, 8ede:A, 8ede:B, 3ifw:A, 3kvf:A, 3kw5:A, 8pw1:A, 8pw1:B, 8pw1:C, 8pw1:D, 8pw1:E, 8pw1:F, 8pw1:G, 8pw1:H, 8pw1:I, 8pw1:J, 7zm0:A, 7zm0:B, 7zm0:C, 7zm0:D, 7zm0:H, 7zm0:E, 7zm0:F, 7zm0:G, 7zm0:I, 7zm0:J
7 4nq3:A 351 50 0.1090 0.0484 0.3400 4.6 4nq3:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218