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BioLiP
>protein
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP
YTISTSTDCSRVN

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1fk6:A 93 93 1.0000 1.0000 1.0000 8.04e-60 1fk7:A
2 1rzl:A 91 92 0.7742 0.7912 0.7826 9.77e-45 1uvc:A, 1uvc:B
3 1bwo:A 90 91 0.5699 0.5889 0.5824 2.73e-34 1bwo:B, 1cz2:A
4 3gsh:A 91 91 0.5484 0.5604 0.5604 1.03e-33 3gsh:B, 1jtb:A, 1mid:A
5 5lqv:A 93 92 0.5806 0.5806 0.5870 1.11e-31
6 6iwo:A 92 92 0.4409 0.4457 0.4457 9.95e-22 6iwo:B, 6iwp:A, 5tvi:W, 7w9a:A
7 3abo:A 453 49 0.1613 0.0331 0.3061 8.8 3abo:C, 3abq:A, 3abq:C, 3abr:A, 3abr:C, 3abs:A, 3abs:C, 3any:A, 3any:C, 3ao0:A, 3ao0:C, 7xrm:A, 7xrm:C, 7xrn:A, 7xrn:C, 5ysn:A, 5ysn:C, 5ysr:A, 5ysr:C
8 7kq5:A 265 21 0.1183 0.0415 0.5238 9.3 3dkt:A, 3dkt:B, 3dkt:C, 3dkt:D, 3dkt:E, 3dkt:F, 3dkt:G, 3dkt:H, 3dkt:I, 3dkt:J, 7lik:A, 7lis:A, 7lit:A, 7mu1:A, 6wkv:A, 6wkv:f, 6wkv:B, 6wkv:Q, 6wkv:C, 6wkv:I, 6wkv:D, 6wkv:H, 6wkv:s, 6wkv:E, 6wkv:v, 6wkv:F, 6wkv:W, 6wkv:G, 6wkv:V, 6wkv:o, 6wkv:P, 6wkv:J, 6wkv:3, 6wkv:M, 6wkv:Z, 6wkv:S, 6wkv:N, 6wkv:i, 6wkv:O, 6wkv:l, 6wkv:e, 6wkv:R, 6wkv:T, 6wkv:p, 6wkv:2, 6wkv:X, 6wkv:8, 6wkv:Y, 6wkv:b, 6wkv:0, 6wkv:4, 6wkv:L, 6wkv:1, 6wkv:5, 6wkv:k, 6wkv:K, 6wkv:6, 6wkv:c, 6wkv:7, 6wkv:U, 6wkv:a, 6wkv:9, 6wkv:q, 6wkv:j, 6wkv:d, 6wkv:x, 6wkv:u, 6wkv:h, 6wkv:m, 6wkv:t, 6wkv:g, 6wkv:n, 6wkv:w, 6wkv:r
9 3nvt:A 345 32 0.1290 0.0348 0.3750 9.7 3nvt:B, 3tfc:A, 3tfc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218