Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AIPQTVAWSPKVALVMILSNIVAIAIGKATIKIQNAGPALPSPQLFGGFGLPAVLATASFGHILGIGVILGLANIGNL

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6kif:K 78 78 1.0000 1.0000 1.0000 6.95e-48 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
2 8asp:k 77 76 0.6923 0.7013 0.7105 1.66e-30 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
3 6k61:k 78 73 0.5128 0.5128 0.5479 3.77e-26 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
4 6vpv:K 78 78 0.6026 0.6026 0.6026 8.58e-26 6vpv:k, 6vpv:9
5 7y7b:K 78 77 0.4872 0.4872 0.4935 9.32e-22 7y8a:K
6 7fix:K1 79 79 0.5256 0.5190 0.5190 1.64e-19 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
7 8wm6:K 69 77 0.4744 0.5362 0.4805 2.50e-18 8wmj:K, 8wmv:K, 8wmw:K
8 7s3d:K 75 77 0.5641 0.5867 0.5714 9.87e-17 7s3d:T, 7s3d:k
9 4l6v:K 80 78 0.4872 0.4750 0.4872 4.59e-16 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
10 6tcl:K 60 69 0.3846 0.5000 0.4348 7.75e-14 6tcl:KK
11 7y5e:KN 70 64 0.3590 0.4000 0.4375 6.25e-13 7y5e:K2, 7y7a:K7, 7y7a:Ko
12 8wey:K 63 66 0.3333 0.4127 0.3939 1.45e-09
13 7m75:K 47 56 0.3333 0.5532 0.4643 8.86e-09 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
14 6kmx:aK 46 56 0.3590 0.6087 0.5000 1.69e-08 6kmx:bK, 6kmx:cK
15 4kt0:K 53 69 0.3590 0.5283 0.4058 2.23e-08
16 7qco:K 65 60 0.3333 0.4000 0.4333 1.10e-07 7qco:R, 7qco:r, 7qco:k
17 5zgb:K 59 62 0.2564 0.3390 0.3226 4.06e-06 7blz:K, 6fos:K, 5zgh:K
18 7dr2:aK 69 76 0.3462 0.3913 0.3553 3.23e-05 7dr0:K, 7dr2:cK
19 7wfd:AK 65 65 0.3077 0.3692 0.3692 4.54e-05 7wfe:BK, 7wg5:AK, 7wg5:BK
20 8bcv:K 88 29 0.2179 0.1932 0.5862 8.52e-05 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
21 8j6z:K 84 29 0.2179 0.2024 0.5862 9.51e-05 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
22 8j7a:K 56 28 0.2051 0.2857 0.5714 4.41e-04
23 8wgh:K 83 45 0.2308 0.2169 0.4000 6.78e-04
24 7a4p:K 86 31 0.2179 0.1977 0.5484 0.001 6zzx:K, 6zzy:K
25 6igz:K 80 25 0.1923 0.1875 0.6000 0.014
26 8cmo:K 89 31 0.1923 0.1685 0.4839 0.042
27 4xk8:k 46 33 0.2179 0.3696 0.5152 0.050 4xk8:K
28 7dz7:K 86 31 0.2051 0.1860 0.5161 0.052 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
29 8htu:K 81 25 0.1410 0.1358 0.4400 0.18 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
30 4y28:K 57 22 0.1538 0.2105 0.5455 0.24
31 5gws:B 214 58 0.1795 0.0654 0.2414 1.3 5gws:C, 5gws:D
32 2qim:A 157 20 0.1282 0.0637 0.5000 4.2 3e85:A, 5mxb:A, 5mxw:A
33 6iaq:D 339 44 0.1667 0.0383 0.2955 5.5 6iaq:A, 6iaq:B, 6iaq:C
34 6jo5:K 45 19 0.1410 0.2444 0.5789 9.3 8h2u:K, 6jo6:K

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218