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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AILYPFTISGNDRNGNFTINFKGTPNSTNNGCIGYSYNGDWEKIEWEGSCDGNGNLVVEVPMSKIPAGVTSGEIQIWWHS
GDLKMTDYKALEHHHH

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fu3:B 99 96 1.0000 0.9697 1.0000 6.16e-69 5fu2:A, 5fu2:B, 5fu3:A, 5fu4:A, 5fu4:B
2 7onj:A 262 86 0.2083 0.0763 0.2326 0.45 7onj:B, 7onj:G, 7onj:C, 7onj:D, 7onj:E, 7onj:F, 7ooa:A, 7ooa:B, 7ooa:G, 7ooa:C, 7ooa:D, 7ooa:E, 7ooa:F
3 5mol:B 322 32 0.1250 0.0373 0.3750 0.52 6eyo:A, 4ezm:C, 4gko:C, 4j4p:A, 5moi:B, 5moi:D, 5mok:D, 5mol:A, 7mxi:B, 5nqw:A, 1o0v:A, 1o0v:B, 7shy:A, 7shy:B, 7shz:B, 7si0:B, 7si0:H
4 5cvc:A 329 34 0.1562 0.0456 0.4412 0.90 5cvc:B, 5cvc:C
5 4uy7:A 327 22 0.1042 0.0306 0.4545 3.1 6fnq:A, 6fnq:B, 6fnr:A, 6fnr:B, 6fns:A, 6fns:B, 6fnt:A, 6fnt:B, 4pin:A, 4pin:B, 4pio:A, 4pio:B, 4pip:A, 4pip:B, 4pip:C, 4pip:D, 4uy5:A, 4uy6:A, 4uy7:B
6 7nac:m 666 27 0.1042 0.0150 0.3704 4.0 8e5t:s, 6em1:m, 6em3:B, 7nad:m, 7ohp:m, 7ohs:m, 7ohw:m, 7ohx:m, 7r6q:m, 7r72:m, 7r7a:m, 8v87:m
7 6elz:m 645 27 0.1042 0.0155 0.3704 4.3 6em5:m, 7ohr:m, 7ohv:m
8 3u4e:L 214 70 0.2083 0.0935 0.2857 5.2 8fk5:L
9 6cb1:s 512 25 0.1042 0.0195 0.4000 5.4 6c0f:s
10 8hfd:A 452 48 0.1250 0.0265 0.2500 6.1 3e74:B, 8hfd:B, 8hfd:C, 8hfd:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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