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BioLiP
>protein
AILYPFTISGNDRNGNFTINFKGTPNSTNNGCIGYSYNGDWEKIEWEGSCDGNGNLVVEVPMSKIPAGVTSGEIQIWAHS
GDLKMTDYKALE

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fu3:B 99 92 0.9891 0.9192 0.9891 3.90e-64 5fu2:A, 5fu2:B, 5fu3:A, 5fu4:A, 5fu4:B
2 7onj:A 262 82 0.2174 0.0763 0.2439 0.20 7onj:B, 7onj:G, 7onj:C, 7onj:D, 7onj:E, 7onj:F, 7ooa:A, 7ooa:B, 7ooa:G, 7ooa:C, 7ooa:D, 7ooa:E, 7ooa:F
3 5mol:B 322 42 0.1522 0.0435 0.3333 1.2 6eyo:A, 4ezm:C, 4gko:C, 4j4p:A, 5moi:B, 5moi:D, 5mok:D, 5mol:A, 7mxi:B, 5nqw:A, 1o0v:A, 1o0v:B, 7shy:A, 7shy:B, 7shz:B, 7si0:B, 7si0:H
4 3u4e:L 214 70 0.2174 0.0935 0.2857 3.3 8fk5:L
5 5dou:D 1430 66 0.2065 0.0133 0.2879 3.4 5dou:A, 5dou:B, 5dou:C, 6w2j:A
6 6fv5:B 382 27 0.1196 0.0288 0.4074 4.2 7b2i:A, 6fv5:A, 7ov9:A, 7ovo:A, 7ovs:A, 7owz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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