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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AIKLYPLKKLEIILEGAHKEFATDLLDRAGVKGYTIVGNLSGKGSHGMYEGHLMFNEDDALIMIIAAVPEELVGPLLEGF
QPFFEAHSGVVFVHDIQVGRPIKFR

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5d4o:A 106 105 1.0000 0.9906 1.0000 6.46e-73 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
2 5d4n:B 90 100 0.8571 1.0000 0.9000 1.76e-57 5drk:C
3 7r30:B 102 93 0.2190 0.2255 0.2473 0.022 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
4 7cyf:D 109 43 0.1524 0.1468 0.3721 0.14 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
5 1rcq:A 357 43 0.1238 0.0364 0.3023 0.22
6 7nrr:AAA 329 40 0.1429 0.0456 0.3750 0.90 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
7 3gyr:A 587 48 0.1238 0.0221 0.2708 1.7 3gyr:B, 3gyr:C, 3gyr:D, 3gyr:E, 3gyr:F, 3gyr:G, 3gyr:H, 3gyr:I, 3gyr:J, 3gyr:K, 3gyr:L
8 8vhh:A 389 38 0.1333 0.0360 0.3684 4.4 8egy:A, 8egy:B, 8egz:A, 8egz:B, 8eh0:A, 8eh0:B, 8eh1:A, 8eh1:B, 8vhh:B
9 1r0z:C 277 38 0.1333 0.0505 0.3684 5.6 1q3h:A, 1q3h:B, 1q3h:C, 1q3h:D, 1r0x:A, 1r0x:B, 1r0x:C, 1r0x:D, 1r0y:A, 1r0y:B, 1r0y:C, 1r0y:D, 1r0z:A, 1r0z:B, 1r0z:D, 1r10:A, 1r10:B, 3si7:A, 3si7:B, 3si7:C, 3si7:D, 1xf9:A, 1xf9:B, 1xf9:C, 1xf9:D, 1xfa:A, 1xfa:B
10 5m0p:A 424 31 0.1143 0.0283 0.3871 7.3 4l40:A, 4l54:A, 5m0n:A, 5m0o:A, 5m0o:C, 5m0p:B
11 5y78:A 305 41 0.1524 0.0525 0.3902 9.5 5y78:B
12 6iuq:B 296 46 0.1143 0.0405 0.2609 9.8 6iuq:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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