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BioLiP
>protein
AIGTWDCDTCLVQNKPEAVKCVACETPKPGTGVKR

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ebq:A 47 35 0.9143 0.6809 0.9143 2.33e-18 2gqe:A, 2k0c:A
2 7mo2:B 38 29 0.8286 0.7632 1.0000 7.05e-16 3ch5:B, 7mo2:D
3 2ebr:A 47 27 0.5143 0.3830 0.6667 3.57e-09
4 7mo5:B 36 27 0.4857 0.4722 0.6296 7.79e-09
5 7mnv:B 38 27 0.4286 0.3947 0.5556 1.28e-06
6 7mns:B 38 25 0.4000 0.3684 0.5600 1.76e-06
7 7mnr:B 40 26 0.4000 0.3500 0.5385 1.82e-06
8 7mnt:B 38 25 0.4000 0.3684 0.5600 1.98e-06 7mnt:D, 7mnu:B
9 7mnp:B 39 26 0.3714 0.3333 0.5000 1.29e-05 7mnp:D, 7mnq:B
10 2ebv:A 57 29 0.4286 0.2632 0.5172 1.84e-05
11 7mo1:B 34 25 0.4000 0.4118 0.5600 3.26e-05
12 7mo3:B 38 28 0.3714 0.3421 0.4643 1.35e-04 7mo3:D, 7mo4:B, 7mo4:D
13 2d9g:A 53 33 0.4000 0.2642 0.4242 4.34e-04
14 8pp6:K 36 33 0.4000 0.3889 0.4242 6.39e-04
15 3a9j:C 32 24 0.2571 0.2812 0.3750 0.010 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
16 6hcz:A 65 20 0.2857 0.1538 0.5000 0.19 6hcz:B
17 8adl:A 633 25 0.3143 0.0174 0.4400 0.24 8adl:I
18 2mxv:A 43 24 0.3143 0.2558 0.4583 0.47
19 1nj3:A 31 24 0.2286 0.2581 0.3333 1.0 1q5w:A
20 8f5o:B 1134 21 0.2571 0.0079 0.4286 1.5 8f5p:B
21 6jk8:B 801 24 0.2000 0.0087 0.2917 1.6
22 2owa:A 128 19 0.2286 0.0625 0.4211 1.8 2owa:B
23 6jk8:A 823 24 0.2000 0.0085 0.2917 2.0 1igr:A, 7v3p:B
24 3pt6:B 915 19 0.2571 0.0098 0.4737 3.3 4da4:A, 3pt6:A, 6w8v:A
25 4wxx:B 1178 19 0.2571 0.0076 0.4737 3.5 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A
26 2k1p:A 33 28 0.2857 0.3030 0.3571 3.7
27 3swr:A 965 19 0.2571 0.0093 0.4737 3.9
28 5xy3:O 196 20 0.2286 0.0408 0.4000 4.3
29 4jbg:A 333 16 0.2571 0.0270 0.5625 4.8 4jbg:B, 4jbg:C, 4jbg:D, 4jbh:A, 4jbh:B, 4jbh:C, 4jbh:D, 4jbi:A, 4jbi:B, 4jbi:C, 4jbi:D, 4jbi:E, 4jbi:F, 4jbi:G, 4jbi:H, 4jbi:I, 4jbi:J, 4jbi:K, 4jbi:L, 4jbi:M, 4jbi:N, 4jbi:O, 4jbi:P
30 4dno:A 297 34 0.2571 0.0303 0.2647 5.3 4dnf:A, 4dnf:B, 4dnf:C, 4dnf:D, 4dno:B, 4dno:C, 4dno:D, 4ehb:A, 4ehb:B, 4ehb:C, 4ehb:D, 4eus:B, 4eus:D, 5hk9:A, 5hk9:B, 5hk9:D, 5hka:A, 5hka:B, 5hka:C, 5hka:D, 5hkb:A, 5hkb:B, 5hkb:C, 5hkb:D, 5jyc:A, 5jyc:B, 5jyc:C, 5jyc:D, 5tnd:C, 5tnd:D, 5tnd:A, 5tnd:B, 5tne:A, 5tne:C, 5tnf:A, 5tnf:B, 5tnf:C, 5tnf:D, 5tng:A, 5tng:B, 5tng:C, 5tng:D, 5tnh:C, 5tnh:D, 5tnh:A, 5tnh:B, 5tni:A, 5tni:B, 5tni:C, 5tni:D, 5tnj:A, 5tnj:B, 5tnj:C, 5tnj:D, 5tnk:A, 5tnk:B, 5tnk:C, 5tnk:D, 5tnl:A, 5tnl:B, 5tnl:C, 5tnl:D, 5tnm:A, 5tnm:B, 5tnm:C, 5tnm:D, 5tnn:A, 5tnn:B, 5tnn:C, 5tnn:D, 5tnp:A, 5tnp:B, 5tnp:C, 5tnp:D, 5tnq:C, 5tnq:D, 5tnq:A, 5tnq:B, 5tnr:C, 5tnr:D, 5tnr:A, 5tnr:B, 5tns:D, 4yx9:A, 4yx9:B, 4yx9:C, 4yx9:D
31 8c8v:A 1032 19 0.1714 0.0058 0.3158 7.5 8c8u:A, 8c8w:A, 8c9d:A
32 6nzj:A 273 27 0.3429 0.0440 0.4444 7.9 6nzj:B
33 7pcv:A 116 24 0.2286 0.0690 0.3333 8.9 2lk0:A, 2lk1:A, 7pcv:B, 7pdv:E, 7pdv:A, 7pdv:C, 7pdv:G
34 3b2s:A 448 19 0.2571 0.0201 0.4737 9.7 3b30:A, 2rkv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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