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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AIGIGTLIIFIAMVLVAAVAAAVLINTSGFLQQKAMATGKESTEQVASGLLCSGVTGHYVKNKGIDRIVIYITPNAGSAP
IDLKQCKLFLMYDGKAVSLNFSKYDTNTVGDFTNGIKDIFNTTVVKWNNADATSFVVVALQDDDKSLLTNAVINKGDLAG
VLVNVSAAFGKHVGTRERVSGYLQPEFGAPAVIEFTTPAAFTSDVIELQ

The query sequence (length=209) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ofq:A 209 209 1.0000 1.0000 1.0000 7.28e-153 7ofq:C, 7ofq:E, 7ofq:G, 7ofq:I, 7ofq:K, 7ofq:M, 7ofq:O, 7ofq:Q, 7ofq:S, 7ofq:U, 7ofq:W, 7ofq:Y, 7ofq:a, 7ofq:c, 7ofq:e, 7ofq:g, 7ofq:i, 7ofq:k, 7ofq:m, 7ofq:o, 7ofq:q, 7ofq:s
2 5ya6:B 165 165 0.4737 0.6000 0.6000 1.43e-60 5ya6:A
3 7ofq:B 213 220 0.5694 0.5587 0.5409 1.84e-49 7ofq:D, 7ofq:F, 7ofq:H, 7ofq:J, 7ofq:L, 7ofq:N, 7ofq:P, 7ofq:R, 7ofq:T, 7ofq:V, 7ofq:X, 7ofq:Z, 7ofq:b, 7ofq:d, 7ofq:f, 7ofq:h, 7ofq:j, 7ofq:l, 7ofq:n, 7ofq:p, 7ofq:r
4 9eq7:L 181 87 0.1866 0.2155 0.4483 6.20e-15 9eq7:A, 9eq7:B, 9eq7:C, 9eq7:D, 9eq7:E, 9eq7:F, 9eq7:G, 9eq7:H, 9eq7:I, 9eq7:J, 9eq7:K, 9eq7:M, 9eq7:N, 9eq7:O, 9eq7:P, 9eq7:Q, 9eq7:R, 9eq7:S, 9eq7:T, 9eq7:U, 9eq7:V, 9eq7:W, 9eq7:X, 9eq7:Y, 9eq7:Z, 9esm:A, 9esm:B, 9esm:C, 9esm:K, 9esm:D, 9esm:E, 9esm:N, 9esm:F, 9esm:G, 9esm:H, 9esm:I, 9esm:Q, 9esm:J, 9esm:L, 9esm:X, 9esm:M, 9esm:O, 9esm:P, 9esm:R, 9esm:S, 9esm:T, 9esm:U, 9esm:V, 9esm:W, 9esm:Y, 9etu:A, 9etu:B, 9etu:C, 9etu:D, 9etu:E, 9etu:F, 9etu:G, 9etu:H, 9etu:I, 9etu:J, 9etu:K, 9etu:L, 9etu:M, 9etu:N, 9etu:O, 9etu:P, 9etu:Q, 9etu:R, 9etu:S, 9etu:T, 9etu:U, 9etu:V, 9etu:W, 9etu:X, 9etu:Y
5 3pv3:A 392 77 0.1340 0.0714 0.3636 0.23 3pv3:B, 3pv3:C, 3pv3:D
6 5ckw:B 400 60 0.0909 0.0475 0.3167 0.92 5ckw:A
7 4mnc:A 305 56 0.0718 0.0492 0.2679 2.1 4mni:A
8 4tsk:A 333 43 0.0766 0.0480 0.3721 3.5
9 7t7j:B 360 62 0.0957 0.0556 0.3226 4.2 7t7j:A
10 8k32:C 333 115 0.1675 0.1051 0.3043 4.9 8k32:A, 8k32:B, 8k32:D
11 6d24:A 502 47 0.0670 0.0279 0.2979 5.9 5aq1:A, 5aq1:B, 5aq1:C, 6d24:B, 6d24:C, 6d24:D
12 4ynn:A 400 118 0.1579 0.0825 0.2797 6.7 4ynn:B, 4ynn:C, 4ynn:D, 4ynn:E, 4ynn:F, 4ynn:G, 4ynn:H
13 8cqd:A 242 47 0.0670 0.0579 0.2979 7.6 7b03:A, 7b03:B, 7b03:C, 7b03:D, 7b03:E, 8cqc:A, 8cqc:B, 8cqc:C, 8cqc:D, 8cqc:E, 8cqd:B, 8cqd:C, 8cqd:E, 8cqd:F, 8cqd:D, 2l6x:A
14 5u57:A 190 31 0.0622 0.0684 0.4194 8.1 5u55:A, 5u55:B, 5u55:C, 5u55:D, 5u57:B, 5u57:C, 5u57:D, 5u58:A, 5u58:B, 5u58:C, 5u5d:A, 5u5d:B, 5u5d:D
15 7x2n:A 340 23 0.0431 0.0265 0.3913 9.5 7x2s:A, 7x2x:A
16 7amv:W 637 68 0.0813 0.0267 0.2500 9.6
17 6tby:AAA 320 51 0.0718 0.0469 0.2941 9.6 6tc5:AAA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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