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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDEDKKKIGMVIVATESA
VDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMV
IAHNPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMGK
KALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRDLQAGETIGLFSYGSGSVGEFYSATLVEG
YKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRPELE

The query sequence (length=389) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1xpl:A 389 389 1.0000 1.0000 1.0000 0.0 1txt:A, 1txt:B, 1txt:C, 1txt:D, 1xpk:A, 1xpk:B, 1xpk:C, 1xpk:D, 1xpl:B, 1xpl:C, 1xpl:D, 1xpm:A, 1xpm:B, 1xpm:C, 1xpm:D
2 3v4x:A 387 383 0.5835 0.5866 0.5927 2.97e-168 3v4x:B, 3v4x:C, 3v4x:D, 1ysl:B
3 3sqz:A 388 388 0.4550 0.4562 0.4562 2.24e-111
4 5hwo:A 418 416 0.3856 0.3589 0.3606 6.45e-73 5hwp:A, 5hwq:A, 5hwr:A
5 5kp7:A 410 370 0.3162 0.3000 0.3324 3.25e-50 5kp8:A
6 2wya:A 460 377 0.2828 0.2391 0.2918 1.98e-35 2wya:B, 2wya:C, 2wya:D
7 2f9a:A 404 338 0.2596 0.2500 0.2988 1.21e-34
8 7cqt:A 450 375 0.2776 0.2400 0.2880 4.33e-33 7cqt:B, 7cqt:C, 2fa0:A, 2fa3:A
9 2p8u:A 462 418 0.2956 0.2489 0.2751 4.95e-33 2p8u:B
10 6esq:I 347 340 0.2391 0.2680 0.2735 4.26e-29
11 8d1u:A 318 171 0.1208 0.1478 0.2749 2.51e-08 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
12 4nhd:D 318 171 0.1234 0.1509 0.2807 6.02e-07 4nhd:A, 4nhd:B, 4nhd:C
13 7bur:B 389 129 0.0874 0.0874 0.2636 2.01e-05 7bur:A, 8jrd:A, 8jrd:B
14 6j1m:A 381 137 0.0951 0.0971 0.2701 2.73e-05 6j1m:B, 6j1n:A, 6j1n:B
15 1chw:A 389 129 0.0874 0.0874 0.2636 2.77e-05 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D
16 5w8q:A 379 165 0.1028 0.1055 0.2424 6.75e-05 5w8q:B, 5wc4:A, 5wc4:B
17 3awj:A 380 111 0.0771 0.0789 0.2703 2.02e-04
18 7vf0:B 396 137 0.0925 0.0909 0.2628 3.52e-04 7vez:A, 7vez:B, 7vez:C, 7vez:D, 7vf0:A, 7vf0:C, 7vf0:D
19 8v8m:A 389 136 0.0848 0.0848 0.2426 0.002 8v8m:C
20 3wd7:A 401 93 0.0668 0.0648 0.2796 0.004 7cct:A, 6l7j:A, 3wd7:B
21 8b3c:B 383 93 0.0643 0.0653 0.2688 0.005 8b32:A, 8b32:B, 8b35:A, 8b35:B, 8b3c:A
22 2d3m:A 405 282 0.1748 0.1679 0.2411 0.006 2d3m:B, 2d52:A, 2d52:B
23 7yj6:A 390 137 0.0900 0.0897 0.2555 0.011 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
24 5bqs:A 323 237 0.1491 0.1796 0.2447 0.013 5bqs:B
25 1ee0:A 376 111 0.0720 0.0745 0.2523 0.018 1ee0:B
26 1xes:A 387 128 0.0694 0.0698 0.2109 0.044 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
27 1z1f:A 388 130 0.0771 0.0773 0.2308 0.054
28 6op5:A 383 93 0.0617 0.0627 0.2581 0.12 6op5:B
29 6gw3:A 383 143 0.0848 0.0862 0.2308 0.38 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
30 3t6s:B 342 40 0.0386 0.0439 0.3750 0.55
31 5wx3:C 353 78 0.0514 0.0567 0.2564 0.75
32 5wx6:B 376 78 0.0514 0.0532 0.2564 0.84 5wx3:A, 5wx3:B, 5wx3:D, 5wx6:A, 5wx6:C, 5wx6:D, 5wx7:A, 5wx7:B, 5wx7:C, 5wx7:D
33 3idq:A 272 68 0.0488 0.0699 0.2794 1.6
34 7sq0:A 306 54 0.0488 0.0621 0.3519 1.6 7sq0:B
35 7f08:J 379 132 0.0771 0.0792 0.2273 1.8 7f08:B, 7f08:D, 7f08:L
36 7spz:A 328 35 0.0386 0.0457 0.4286 3.1 7spy:A
37 1mzj:A 334 94 0.0643 0.0749 0.2660 3.5 1mzj:B
38 5zeb:g 156 53 0.0386 0.0962 0.2830 6.0 6dzi:p, 6dzk:G, 8fr8:h, 7kgb:g, 7msc:g, 7msh:g, 7msm:g, 7msz:g, 7mt2:g, 7mt3:g, 7mt7:g, 5o5j:G, 5o61:BG, 7sfr:g, 5v93:g, 8v9j:g, 8v9k:g, 8v9l:g, 8whx:h, 8wi7:h, 8wi9:h, 8wib:h, 8wid:h, 8wif:h, 5xyu:G, 5zep:g, 5zeu:g
39 7uu5:A 379 90 0.0566 0.0580 0.2444 6.6 8e40:A, 8edj:A, 5k81:A, 5k81:B, 5k81:C, 5k81:D, 5k81:E, 5k81:F, 5k82:A, 5k82:B, 5k82:C, 5k82:D, 5k83:C, 5k83:E, 5k83:A, 5k83:D, 5k83:F, 5k83:B, 6p3x:A, 6p3x:B, 6p3y:A, 6p3y:B, 6p3z:A, 6p3z:B, 6p40:A, 6p40:B, 7uu3:A, 7uu3:B, 7uu4:A, 7uu5:B
40 3io3:A 230 79 0.0617 0.1043 0.3038 6.7
41 6kvs:A 313 57 0.0540 0.0671 0.3684 7.0 6kvs:B
42 7o6y:j 90 48 0.0411 0.1778 0.3333 7.3 7o71:j, 6rfr:j, 6y79:j
43 4hlu:A 265 57 0.0463 0.0679 0.3158 9.4 4hlu:B, 4zir:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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