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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCVYG
EVHQVVVDCRKDSPTYLKWEKFIISYKNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDERIGID
WPTNTPILSDRDILATK

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7m15:D 181 177 0.9887 0.9669 0.9887 1.87e-131 7an4:A, 7an4:B, 7an4:D, 7m14:A, 7m14:B, 7m14:C, 7m14:D, 7m14:E, 7m14:F, 7m15:A, 7m15:B, 7m15:C, 7m15:E, 7m15:F
2 8dco:B 181 175 0.8983 0.8785 0.9086 8.47e-121 8db5:A, 8db5:B, 8db5:C, 8db5:D, 8db5:E, 8db5:F, 8db5:G, 8db5:H, 8dco:A
3 8dcl:A 185 177 0.8023 0.7676 0.8023 3.33e-108 7anj:A, 7anj:B, 8dak:A, 8dak:B, 8dcl:B
4 1dzt:A 183 165 0.3164 0.3060 0.3394 2.61e-25 1dzt:B
5 6ndr:A 188 162 0.2938 0.2766 0.3210 5.79e-19 6ndr:B
6 3ryk:A 175 174 0.2768 0.2800 0.2816 8.46e-19 3ryk:B
7 6c46:A 183 166 0.2938 0.2842 0.3133 2.15e-18 6c46:D
8 2ixh:A 184 161 0.2655 0.2554 0.2919 2.44e-18 2ixh:B, 2ixi:B, 2ixi:A, 2ixk:A, 2ixk:B
9 7pvi:AAA 199 176 0.2825 0.2513 0.2841 2.07e-15 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
10 1epz:A 183 168 0.2938 0.2842 0.3095 4.80e-15
11 2ixc:A 198 170 0.2599 0.2323 0.2706 7.46e-14 2ixc:B, 2ixc:C, 2ixc:D
12 5buv:A 174 167 0.2825 0.2874 0.2994 5.26e-12 5buv:B
13 1oi6:A 202 177 0.2768 0.2426 0.2768 2.60e-11 1oi6:B
14 7pwh:AAA 203 165 0.2712 0.2365 0.2909 8.47e-10
15 4hn1:C 201 165 0.2542 0.2239 0.2727 5.12e-07 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
16 8bf8:A 302 61 0.0960 0.0563 0.2787 1.1
17 7cp7:A 430 87 0.1243 0.0512 0.2529 1.4 7cp6:A, 7cp6:B
18 8auv:C 117 62 0.1073 0.1624 0.3065 2.2 8b2l:C1
19 8h1j:A 362 61 0.0960 0.0470 0.2787 2.4 8ex9:A, 8exa:A
20 7s6e:B 400 93 0.1299 0.0575 0.2473 9.9 7s6e:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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