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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AIDPALPEYQKASGVSGNLSSVGSDTLANLMTMWAEEYKRLYPNVNIQIQAAGSSTAPPALTEGTANLGPMSRKMKDVEL
QAFEQKYGYKPTAVPVAVDALAIFVHKDNPIKGLTMQQVDAIFSATRLCGSKQDVKTWGDLGLTGDWAKKPVQLFGRNSV
SGTYGYFKEEALCKGDFRPNVNEQPGSASVVQSVSQSLNGIGYSGIGYKTASVKTVALAKKEGAAFVEDNEQNALNGTYP
LSRFLYVYVNKAPNKPLDPLEAQFLKLVLSKTGQQVVVKDGYIPLPAKVAEKAIKELG

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4omb:A 298 298 1.0000 1.0000 1.0000 0.0 4omb:B, 4omb:C, 4omb:D
2 4q8r:A 241 271 0.3020 0.3734 0.3321 4.90e-25
3 1twy:A 249 270 0.2349 0.2811 0.2593 1.75e-15
4 6vme:C 67 46 0.0671 0.2985 0.4348 0.17 6vme:K, 6vme:L, 6vme:M, 6vme:N
5 8hp3:A 298 85 0.0872 0.0872 0.3059 0.42 8hp3:B, 8hp3:C
6 7sgl:A 3852 129 0.1074 0.0083 0.2481 0.72
7 5y3r:C 3636 129 0.1074 0.0088 0.2481 0.74
8 7dm1:B 334 66 0.0638 0.0569 0.2879 0.87 7dm1:A, 7dm2:A, 1pc3:A, 1pc3:B
9 3k6x:A 322 32 0.0403 0.0373 0.3750 1.1 3cfx:A, 3cfx:B, 3k6w:A, 3k6x:B
10 7jil:n 95 54 0.0503 0.1579 0.2778 1.9
11 4z9n:B 324 44 0.0570 0.0525 0.3864 2.1 4z9n:A, 4z9n:C, 4z9n:D, 4z9n:E, 4z9n:F
12 5z19:B 601 35 0.0403 0.0200 0.3429 2.5 6jz2:A, 6jz2:B, 6jz3:A, 6jz3:B, 6jz4:B, 6jz6:A, 6jz6:B, 6jz8:A, 5z19:A, 5z19:C, 5z19:D, 5z19:E, 5z19:F
13 6jz4:A 576 35 0.0403 0.0208 0.3429 2.5 6jz5:A, 6jz5:B, 6jz7:A, 6jz7:B, 6jz8:B
14 8bot:A 3528 31 0.0336 0.0028 0.3226 5.4
15 7nfc:A 3562 31 0.0336 0.0028 0.3226 5.4 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
16 7k1j:A 3584 31 0.0336 0.0028 0.3226 5.4 7k19:A
17 7nfe:A 3585 31 0.0336 0.0028 0.3226 5.4
18 7k1k:A 3604 31 0.0336 0.0028 0.3226 5.4 7k1b:A
19 7k1n:A 3634 31 0.0336 0.0028 0.3226 5.4 7z88:A
20 7k17:B 3645 31 0.0336 0.0027 0.3226 5.4 7k17:A
21 7otm:A 3656 31 0.0336 0.0027 0.3226 5.4 7otp:A, 7otv:A, 7otw:A, 7oty:A
22 8ez9:L 3662 31 0.0336 0.0027 0.3226 5.4 8ez9:C
23 6zha:A 3707 31 0.0336 0.0027 0.3226 5.4 6zh8:A
24 8eza:L 3720 31 0.0336 0.0027 0.3226 5.4 8eza:C, 7lt3:C, 7lt3:L
25 6zhe:F 3731 31 0.0336 0.0027 0.3226 5.5
26 6zhe:A 3768 31 0.0336 0.0027 0.3226 5.6
27 7k0y:A 3669 31 0.0336 0.0027 0.3226 5.6
28 7z87:A 3689 31 0.0336 0.0027 0.3226 5.6
29 8ezb:C 3724 31 0.0336 0.0027 0.3226 5.6 8ezb:L
30 7sud:A 3740 31 0.0336 0.0027 0.3226 5.6
31 7su3:A 3802 31 0.0336 0.0026 0.3226 5.6
32 7omi:AAA 661 93 0.0973 0.0439 0.3118 5.9 7omi:BBB, 7omi:CCC, 7omi:DDD, 7omi:EEE, 7omi:FFF, 7oms:AAA, 7oms:DDD, 7oms:CCC, 7oms:BBB, 7oms:FFF, 7oms:EEE, 6t6g:AAA, 6t6g:DDD, 6t6g:CCC, 6t6g:BBB, 6t6g:FFF, 6t6g:EEE, 6t75:AAA, 6t75:DDD, 6t75:CCC, 6t75:BBB, 6t75:FFF, 6t75:EEE, 6t7g:AAA, 6t7g:DDD, 6t7g:CCC, 6t7g:BBB, 6t7g:FFF, 6t7g:EEE
33 7ewx:B 183 47 0.0369 0.0601 0.2340 7.2 7ewu:B, 7ewu:C, 7ewu:D, 7ewv:A, 7eww:A, 7eww:B, 7ewx:A, 7ewz:A, 7ewz:B, 7ex0:A, 7ex0:B, 7ex2:A, 7ex2:B, 7ex3:A, 7ex4:A, 7ex6:A, 7ex6:B, 7ex6:C, 7ex6:D, 7ex7:A, 7ex7:B, 7ex7:C, 7ex7:D, 7ex8:A, 7ex9:A
34 1bf6:A 291 39 0.0503 0.0515 0.3846 7.6 1bf6:B, 4lef:C, 4lef:D, 4lef:A, 4lef:B, 4lef:E, 4lef:F, 4lef:G, 4lef:H
35 6w1i:B 194 44 0.0503 0.0773 0.3409 9.6 2fxv:A, 2fxv:B, 6w1i:A, 6w1i:C, 6w1i:D, 1y0b:A, 1y0b:B, 1y0b:C, 1y0b:D
36 2onr:A 314 38 0.0470 0.0446 0.3684 10.0 3cij:A, 3cij:B, 2onk:E, 2onk:J, 2ons:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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