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BioLiP
>protein
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2rkn:A 77 77 1.0000 1.0000 1.0000 1.69e-52
2 8ay6:A 190 30 0.1429 0.0579 0.3667 2.0 7avw:A, 8ay3:A, 8ay7:A, 8ay8:A, 8ay9:A, 8aya:A, 5mmx:B, 5mmx:A, 5mn0:A, 6zuc:A
3 6e36:A 395 14 0.1039 0.0203 0.5714 2.0 6e36:B
4 1ep3:A 311 16 0.1299 0.0322 0.6250 2.5 1ep1:A, 1ep2:A, 5ksw:A, 5ksw:C, 5ue9:A, 5ue9:C
5 5wzo:A 123 19 0.1169 0.0732 0.4737 3.4 6kqu:A, 5wzm:A, 5wzs:A, 5wzt:A, 5wzu:A, 5wzv:A, 5wzw:A, 5y5e:A
6 6nqz:A 206 58 0.1948 0.0728 0.2586 3.8
7 5ulb:A 333 18 0.1299 0.0300 0.5556 3.8
8 4pxd:A 411 10 0.1039 0.0195 0.8000 5.2 4pxd:B, 1z2l:A, 1z2l:B
9 1jqg:A 409 19 0.1169 0.0220 0.4737 7.9
10 5rym:A 284 27 0.1299 0.0352 0.3704 8.9 3bin:A, 5ryn:A, 5ryo:A, 5ryp:A, 5ryq:A, 5ryr:A, 5rys:A, 5ryt:A, 5ryu:A, 5ryv:A, 5ryw:A, 5ryx:A, 5ryy:A, 5ryz:A, 5rz0:A, 5rz1:A, 5rz2:A, 5rz3:A, 5rz4:A, 5rz5:A, 5rz6:A, 5rz7:A, 5rz8:A, 5rz9:A, 5rza:A, 5rzb:A, 5rzc:A, 5rzd:A, 5rze:A, 5rzf:A, 5rzg:A, 5rzh:A, 5rzi:A, 5rzj:A, 5rzk:A, 5rzl:A, 5rzm:A, 5rzn:A, 5rzo:A, 5rzp:A, 5rzq:A, 5rzr:A, 5rzs:A, 5rzt:A, 5rzu:A, 5rzv:A, 5rzw:A, 5rzx:A, 5rzy:A, 5rzz:A, 5s00:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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