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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLDHHPEWFNVYNKVHITLSTHECAG
LSERDINLASFIEQVAVSM

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1f93:A 103 99 1.0000 0.9612 1.0000 1.08e-71 1dcp:A, 1dcp:B, 1dcp:C, 1dcp:D, 1dcp:E, 1dcp:F, 1dcp:G, 1dcp:H, 1f93:B, 1f93:C, 1f93:D
2 2v6t:B 100 94 0.4545 0.4500 0.4787 1.70e-27 2v6t:A
3 2bib:A 540 63 0.2020 0.0370 0.3175 0.42 1wra:A, 1wra:B
4 4qi7:A 805 26 0.1010 0.0124 0.3846 0.69 4qi7:B
5 5bxa:A 414 49 0.1515 0.0362 0.3061 1.5
6 8wt1:C 651 67 0.2020 0.0307 0.2985 1.7 8wt1:A, 8wt1:B, 8wt1:D, 8wt1:E, 8wt1:F, 8wt1:G, 8wt1:H
7 5u8t:2 583 81 0.2121 0.0360 0.2593 2.1
8 7pt6:2 629 81 0.2121 0.0334 0.2593 2.2 5bk4:2, 5bk4:A, 6eyc:2, 6f0l:A, 6f0l:2, 3ja8:2, 7p30:2, 7p30:A, 7p5z:2, 7p5z:A, 7pt6:B, 7pt7:2, 7pt7:B, 6rqc:2, 6sko:2, 5u8s:2, 7v3u:2, 7v3u:B, 7v3v:2, 7v3v:B, 5v8f:2, 8w7m:2, 7w8g:2, 7w8g:B
9 8b9a:2 568 81 0.2121 0.0370 0.2593 2.7 8b9b:2, 8b9c:2
10 8xgc:2 778 81 0.2121 0.0270 0.2593 3.1 8kg6:2, 8kg8:2, 8kg9:2, 8p5e:2, 8p62:2, 8p63:2, 7pmk:2, 7pmn:2, 6ptn:i, 6ptn:2, 6pto:h, 6pto:2, 7qhs:2, 6skl:2, 6u0m:2, 7z13:2, 7z13:a
11 6ori:A 381 83 0.2323 0.0604 0.2771 5.5
12 6lt4:A 623 58 0.1616 0.0257 0.2759 8.9 6lt4:B, 6lt4:C, 6lt4:D, 6lt4:E, 6lt4:F, 6lt4:G, 6lt4:H, 6lt4:I, 6lt4:J, 6lt4:K, 6lt4:L, 6lt4:M, 6lt4:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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