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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AHMNDIKQLLWNGELNVLVSIDPSFLMKGSEIAVLRIRVPRETYLVNYMPLIWNKISEKYFWFEHNKTPIPWNYPVGVLF
DCLASFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVIT
RNFQDFIEISNKISSSRPRHIPLIIQTSRFRISQPTISMTGVNPTLKDIEGDIDVMVICQGIEIPWHMLLYDLYSKLRSF
DGFLYITLVPI

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2dym:G 262 266 0.9801 0.9389 0.9248 1.19e-172 2dym:A, 2dym:E, 2dym:C, 3w1s:A
2 7w36:A 262 235 0.2311 0.2214 0.2468 1.13e-08
3 1y8a:A 313 74 0.0797 0.0639 0.2703 1.0
4 6cbq:A 234 108 0.0996 0.1068 0.2315 1.4 6cbq:B, 6cc0:A, 6cc0:B, 3szt:A, 3szt:B
5 3h9d:B 116 38 0.0478 0.1034 0.3158 3.4
6 4zra:A 196 79 0.0797 0.1020 0.2532 3.6 3mha:A
7 7mq8:LT 869 52 0.0637 0.0184 0.3077 4.4 7mq9:LT
8 8ulg:A 827 44 0.0677 0.0206 0.3864 5.3 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
9 4h8n:A 303 54 0.0598 0.0495 0.2778 5.6 4h8n:B
10 8foc:B 450 55 0.0717 0.0400 0.3273 5.7 6di2:A, 6di6:A, 6dtv:A, 6dtz:A, 6du0:A, 8fod:B, 8foh:B, 8foj:B, 8fok:B, 3lgb:A, 3lgb:B, 7tl2:A, 7tl3:A, 7tl4:A
11 5fhz:F 449 56 0.0598 0.0334 0.2679 8.7
12 6aaf:A 112 23 0.0438 0.0982 0.4783 9.2
13 7a6q:A 489 56 0.0598 0.0307 0.2679 9.6 7a6q:B, 5fhz:A, 5fhz:B, 5fhz:C, 5fhz:D, 5fhz:E, 5fhz:G, 5fhz:H, 7qk8:A, 7qk8:B, 7qk9:A, 7qk9:B, 6s6w:A, 6s6w:B, 6te5:A, 6te5:B, 6tgw:A, 6tgw:B, 6tgw:C, 6tgw:D, 6try:A, 6try:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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