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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AHMNDIKQLLWNGELNVLVSIDPSFLMEIAVLRIRVPRETYLVNYMPLIWNKEKYFWFEHNKTPIPWNYPVGVLFDCLAS
FENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWKQVCFILNGSSKAIMSLSVNEARKFWGSVITRNFQD
FIEISNKISSSRPRHIPLIIQTSRTRISQPTISMTGVNPTLKDIEGDILDVMVICQGIEIPWHMLLYDLYSKLRSFDGFL
YITLVPI

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2dym:G 262 264 0.9919 0.9351 0.9280 1.06e-171 2dym:A, 2dym:E, 2dym:C, 3w1s:A
2 7w36:A 262 234 0.2389 0.2252 0.2521 3.41e-08
3 6cbq:A 234 108 0.1053 0.1111 0.2407 0.23 6cbq:B, 6cc0:A, 6cc0:B, 3szt:A, 3szt:B
4 1ffq:A 540 45 0.0567 0.0259 0.3111 2.7 7fd6:A, 2wk2:A, 2wly:A, 2wlz:A, 2wm0:A, 1x6n:A
5 7mq8:LT 869 52 0.0648 0.0184 0.3077 5.0 7mq9:LT
6 8foc:B 450 55 0.0729 0.0400 0.3273 5.0 6di2:A, 6di6:A, 6dtv:A, 6dtz:A, 6du0:A, 8fod:B, 8foh:B, 8foj:B, 8fok:B, 3lgb:A, 3lgb:B, 7tl2:A, 7tl3:A, 7tl4:A
7 8ulg:A 827 44 0.0688 0.0206 0.3864 5.5 7jsn:A, 6mzb:A, 8ufi:A, 8ugb:A, 8ugs:A
8 4h8n:A 303 54 0.0607 0.0495 0.2778 5.6 4h8n:B
9 3h9d:B 116 23 0.0405 0.0862 0.4348 6.0
10 6aaf:A 112 23 0.0445 0.0982 0.4783 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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