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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AHMFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNYLNSDVFKEAHKN
VRLKSDDDGQQSPILSNKVFKYDIGYHYQK

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fnh:A 110 110 1.0000 1.0000 1.0000 6.16e-80 4fnh:B, 4fni:A, 4fni:B, 3lgm:A, 3lgm:B, 3lgn:A, 3lgn:B, 3qgp:A, 3qgp:B, 2zdp:A, 2zdp:B
2 2zdo:D 109 107 0.6091 0.6147 0.6262 1.23e-44 2zdo:A, 2zdo:B, 2zdo:C
3 8avh:B 106 102 0.3364 0.3491 0.3627 1.17e-14 8avi:A, 8avi:B
4 4jou:A 155 60 0.2273 0.1613 0.4167 3.97e-08 4fvc:A, 4fvc:B, 4fvc:C, 4fvc:D, 4fvc:E, 4fvc:F, 4oz5:A
5 3hx9:A 101 83 0.1818 0.1980 0.2410 0.035 6ds7:A, 6ds7:B, 6ds8:A, 6ds8:B, 3hx9:B, 4nl5:A, 4nl5:B, 6ple:A, 6ple:B
6 2boi:A 113 80 0.1909 0.1858 0.2625 0.16 2boi:B, 2bv4:A, 2bv4:B
7 4byf:A 698 48 0.1364 0.0215 0.3125 0.85 4byf:C
8 5wp6:A 977 59 0.1273 0.0143 0.2373 1.9 6bqv:A, 6bqv:C, 6bqv:B, 6bqv:D, 5wp6:B, 5wp6:C, 5wp6:D
9 5d6j:A 630 42 0.1273 0.0222 0.3333 2.0 5ey8:A, 5ey8:B, 5ey8:C, 5ey8:D, 5ey8:E, 5ey8:F, 5ey8:G, 5ey8:H, 5icr:A, 5icr:B, 5icr:C, 5icr:D
10 4l79:A 734 67 0.1364 0.0204 0.2239 7.4 6c1d:P, 6c1g:P
11 8urb:A 921 41 0.1364 0.0163 0.3659 7.7 8g6r:A
12 8x38:A 430 24 0.1000 0.0256 0.4583 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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