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BioLiP
>protein
AHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKA
HQIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRL
AP

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1wv4:A 162 162 1.0000 1.0000 1.0000 1.81e-121 1wv4:B, 6ymh:AAA
2 1jnw:A 214 208 1.0000 0.7570 0.7788 1.01e-112 1dnl:A, 1g76:A, 1g77:A, 1g78:A, 1g79:A, 6ylz:AAA, 6ymh:BBB
3 1ci0:A 205 203 0.4074 0.3220 0.3251 1.17e-27 1ci0:B
4 4hmt:B 207 190 0.3210 0.2512 0.2737 5.78e-24 4hms:A, 4hms:B, 4hmt:A, 4hmu:A, 4hmu:B, 4hmv:A, 4hmv:B, 1ty9:A, 1ty9:B
5 1nrg:A 213 178 0.3395 0.2582 0.3090 9.22e-22 6h00:A, 3hy8:A, 8qyt:A, 8qyw:A
6 1t9m:A 204 189 0.3272 0.2598 0.2804 6.68e-21 1t9m:B
7 4hmw:B 205 191 0.3025 0.2390 0.2565 2.22e-19 4hmw:A, 4hmx:A, 4hmx:B
8 2i02:A 140 66 0.1173 0.1357 0.2879 0.34 2i02:B
9 3jd5:I 311 106 0.1667 0.0868 0.2547 0.61 6neq:I, 6nf8:I
10 4fb3:A 115 65 0.1049 0.1478 0.2615 0.66 4fb3:B, 4fb3:E
11 3ec6:A 129 85 0.1790 0.2248 0.3412 0.94
12 7rzb:A 138 50 0.0988 0.1159 0.3200 1.2
13 5ck5:A 221 42 0.0988 0.0724 0.3810 3.8 5ck4:A, 5ck4:B, 5ck5:B, 5ck5:C, 5ck5:D
14 7pnt:G 325 72 0.1111 0.0554 0.2500 4.8 7pnu:G, 7pnv:G, 7pnw:G
15 7p2e:G 330 93 0.1420 0.0697 0.2473 5.0 7a5f:G6, 7a5g:G6, 7a5i:G6, 7a5k:G6, 8any:AG, 8csp:G, 8csq:G, 8csr:G, 8css:G, 8cst:G, 8csu:G, 3j9m:AG, 8k2a:SI, 7l08:AG, 6nu2:AG, 6nu3:AG, 7og4:AG, 8oir:Ag, 8ois:Ag, 7pnx:G, 7pny:G, 7pnz:G, 7po0:G, 7po1:G, 7po2:G, 7po3:G, 7qi4:AG, 7qi5:AG, 7qi6:AG, 8qrk:G, 8qrl:G, 8qrm:G, 8qrn:G, 6rw4:G, 6rw5:G, 6vlz:AG, 6vmi:AG, 8xt0:SI, 8xt2:SI, 6zm5:AG, 6zm6:AG, 6zs9:AG, 6zsa:AG, 6zsb:AG, 6zsc:AG, 6zsd:AG, 6zse:AG, 6zsg:AG
16 4xru:C 424 54 0.0864 0.0330 0.2593 6.9 4xru:F
17 6sga:CH 222 14 0.0679 0.0495 0.7857 7.2 7pua:CH, 6sgb:CH
18 6hiv:CH 273 14 0.0679 0.0403 0.7857 7.2 6hiw:CH, 6hiy:CH, 7pub:CH
19 7aor:c 263 14 0.0679 0.0418 0.7857 7.3
20 7bu5:A 84 19 0.0679 0.1310 0.5789 8.4
21 6cj0:A 253 58 0.0988 0.0632 0.2759 9.1 6cj0:B, 6d3w:A, 6d3w:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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