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BioLiP
>protein
AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eyo:C 88 74 1.0000 0.8409 1.0000 7.67e-50 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
2 1hlo:A 80 67 0.9054 0.8375 1.0000 1.01e-44
3 5i50:B 96 66 0.4054 0.3125 0.4545 4.90e-13 5i50:A, 1nkp:A, 1nkp:D
4 8ia3:E 111 95 0.4189 0.2793 0.3263 2.53e-08 8ia3:A, 8ia3:B, 8ia3:F
5 1an4:A 65 58 0.3243 0.3692 0.4138 1.15e-07 1an4:B
6 8osb:B 66 46 0.2162 0.2424 0.3478 4.79e-05
7 8ow1:B 116 70 0.3243 0.2069 0.3429 1.17e-04 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
8 8hov:A 87 74 0.2973 0.2529 0.2973 2.44e-04 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
9 1am9:C 82 57 0.2432 0.2195 0.3158 2.68e-04 1am9:D, 1am9:A, 1am9:B
10 7f2f:B 94 79 0.2703 0.2128 0.2532 7.40e-04 7f2f:A
11 5gnj:B 77 51 0.2297 0.2208 0.3333 0.004 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
12 1nlw:A 79 75 0.3108 0.2911 0.3067 0.037 1nlw:D
13 4a15:A 596 57 0.1757 0.0218 0.2281 0.058 5h8w:A, 2vsf:A
14 7xi3:A 287 53 0.2297 0.0592 0.3208 0.17
15 1mdy:A 68 43 0.1622 0.1765 0.2791 0.24 1mdy:B, 1mdy:C, 1mdy:D
16 7d8t:A 199 52 0.2027 0.0754 0.2885 0.36 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
17 4zpr:A 235 46 0.1757 0.0553 0.2826 0.69
18 6vrb:A 1031 27 0.1757 0.0126 0.4815 0.91
19 6vrc:A 1007 27 0.1757 0.0129 0.4815 0.92
20 7xq5:A 75 60 0.2297 0.2267 0.2833 1.1
21 7xi4:A 283 51 0.2027 0.0530 0.2941 1.4 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
22 7z5i:A 56 43 0.1351 0.1786 0.2326 3.1 7z5i:B, 7z5k:A, 7z5k:B
23 5nj8:D 134 51 0.1892 0.1045 0.2745 3.4
24 3afv:A 439 37 0.1486 0.0251 0.2973 3.8 2d3q:A, 2d3q:B, 3mm1:A, 3mm2:A, 3mm3:A, 3vxi:A, 3vxj:A
25 7aor:al 292 22 0.1351 0.0342 0.4545 6.6 6hiv:DL, 6hiw:DL
26 5x7g:A 700 33 0.1351 0.0143 0.3030 7.7 5x7h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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