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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD
ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT
ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIA
EQD

The query sequence (length=243) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 9ft0:G 243 243 1.0000 1.0000 1.0000 0.0 5ahj:G, 5bou:G, 8bw1:G, 5bxl:G, 5bxn:G, 5cgf:G, 5cgg:G, 5cgh:G, 5cgi:G, 5cz4:G, 5cz5:G, 5cz6:G, 5cz7:G, 5cz8:G, 5cz9:G, 5cza:G, 5d0s:G, 5d0t:G, 5d0v:G, 5d0w:G, 5d0x:G, 5d0z:G, 5dki:G, 5dkj:G, 5fg7:G, 5fg9:G, 5fga:G, 5fgd:G, 5fge:G, 5fgf:G, 5fgg:G, 5fgh:G, 5fgi:G, 5fhs:G, 9fst:G, 9fsv:G, 9ft1:G, 1g0u:G, 1g0u:U, 4g4s:A, 1g65:G, 6g7f:G, 6g8m:G, 6g8n:G, 6gop:G, 6h39:G, 6htb:G, 6htc:G, 6htd:G, 6htp:G, 6htr:G, 6hub:G, 6huc:G, 6huq:G, 6huu:G, 6huv:G, 6hv3:G, 6hv4:G, 6hv5:G, 6hv7:G, 6hva:G, 6hvr:G, 6hvs:G, 6hvt:G, 6hvu:G, 6hvv:G, 6hvw:G, 6hvx:G, 6hvy:G, 6hw0:G, 6hw3:G, 6hw4:G, 6hw5:G, 6hw6:G, 6hw7:G, 6hw8:G, 6hw9:G, 6hwa:G, 6hwb:G, 6hwc:G, 6hwd:G, 6hwe:G, 6hwf:G, 1jd2:G, 5jhr:G, 5jhs:G, 5l52:G, 5l54:G, 5l55:G, 5l5a:G, 5l5b:G, 5l5d:G, 5l5e:G, 5l5f:G, 5l5h:G, 5l5i:G, 5l5j:G, 5l5o:G, 5l5p:G, 5l5q:G, 5l5r:G, 5l5s:G, 5l5t:G, 5l5u:G, 5l5v:G, 5l5w:G, 5l5x:G, 5l5y:G, 5l5z:G, 5l60:G, 5l61:G, 5l62:G, 5l63:G, 5l64:G, 5l65:G, 5l66:G, 5l67:G, 5l68:G, 5l69:G, 5l6a:G, 5l6b:G, 5l6c:G, 5lai:G, 5laj:G, 5ltt:G, 5m2b:G, 3mg4:G, 3mg6:G, 3mg7:G, 3mg8:G, 4nnn:G, 4nnw:G, 4no1:G, 4no6:G, 4no8:G, 4no9:G, 7o2l:G, 3oeu:G, 3oev:G, 8ohz:G, 8oi1:G, 8olr:G, 4qby:G, 4qlq:G, 4qls:G, 4qlt:G, 4qlu:G, 4qlv:G, 4qux:G, 4quy:G, 4qv0:G, 4qv1:G, 4qv3:G, 4qv4:G, 4qv5:G, 4qv6:G, 4qv7:G, 4qv8:G, 4qv9:G, 4qvl:G, 4qvm:G, 4qvn:G, 4qvp:G, 4qvq:G, 4qvv:G, 4qvw:G, 4qvy:G, 4qw0:G, 4qw1:G, 4qw3:G, 4qw4:G, 4qw5:G, 4qw6:G, 4qw7:G, 4qwf:G, 4qwg:G, 4qwi:G, 4qwj:G, 4qwk:G, 4qwl:G, 4qwr:G, 4qwu:G, 4qwx:G, 4qxj:G, 4qz0:G, 4qz2:G, 4qz3:G, 4qz4:G, 4qz5:G, 4qz6:G, 4qz7:G, 4qzw:G, 4qzx:G, 4qzz:G, 4r00:G, 4r02:G, 4r17:G, 4r18:G, 8rhj:G, 8rhk:G, 8rhl:G, 4rur:G, 1ryp:A, 1ryp:O, 3sdi:G, 3sdi:U, 3sdk:G, 4y69:G, 4y6a:G, 4y6v:G, 4y6z:G, 4y70:G, 4y74:G, 4y75:G, 4y77:G, 4y78:G, 4y7w:G, 4y7x:G, 4y7y:G, 4y80:G, 4y81:G, 4y82:G, 4y84:G, 4y8g:G, 4y8h:G, 4y8i:G, 4y8j:G, 4y8k:G, 4y8l:G, 4y8m:G, 4y8n:G, 4y8o:G, 4y8p:G, 4y8q:G, 4y8r:G, 4y8s:G, 4y8t:G, 4y8u:G, 4y9y:G, 4y9z:G, 4ya0:G, 4ya1:G, 4ya2:G, 4ya3:G, 4ya4:G, 4ya5:G, 4ya7:G, 4ya9:G, 4z1l:G, 6zou:G, 6zp6:G, 6zp8:G
2 1iru:A 244 244 0.5473 0.5451 0.5451 1.48e-91 1iru:O
3 6he5:D 242 225 0.3169 0.3182 0.3422 1.18e-35 6he5:E, 6he5:A, 6he5:B, 6he5:G, 6he5:F, 6he5:C
4 8f7k:A 230 178 0.2675 0.2826 0.3652 8.63e-32 8f7k:G, 8f7k:B, 8f7k:C, 8f7k:D, 8f7k:E, 8f7k:F, 8f7k:O, 8f7k:U, 8f7k:P, 8f7k:Q, 8f7k:R, 8f7k:S, 8f7k:T
5 1iru:G 245 173 0.2593 0.2571 0.3642 3.24e-31 1iru:U
6 3sdi:F 242 173 0.2675 0.2686 0.3757 7.21e-31 3mg6:F, 3mg7:F, 3mg8:F, 3oeu:F, 3oev:F, 3sdi:T, 3sdk:F
7 1iru:B 233 240 0.3004 0.3133 0.3042 1.28e-29 8bzl:O, 8bzl:A, 1iru:P
8 1iru:D 243 238 0.3004 0.3004 0.3067 4.07e-29 8bzl:Q, 8bzl:C, 1iru:R
9 1iru:C 250 181 0.2387 0.2320 0.3204 1.18e-26 8bzl:P, 8bzl:B, 1iru:Q
10 5l5u:A 250 254 0.2881 0.2800 0.2756 8.63e-25 5l5x:A, 5l60:A, 5l61:A, 5l62:A, 5l63:A, 5l64:A
11 8yvp:M 231 182 0.2222 0.2338 0.2967 1.48e-24 8bzl:D, 8bzl:R
12 4y81:C 240 246 0.2840 0.2875 0.2805 9.69e-24
13 8bzl:S 237 227 0.2551 0.2616 0.2731 1.74e-23 8bzl:E
14 8g6e:C 242 177 0.2469 0.2479 0.3390 3.99e-23 8g6e:Q
15 5nif:S 236 177 0.2099 0.2161 0.2881 3.69e-22 5nif:E
16 5nif:T 232 226 0.2387 0.2500 0.2566 1.68e-12 5nif:F, 4x6z:T, 4x6z:F
17 3unf:H 219 99 0.1152 0.1279 0.2828 0.18 3unf:V
18 7b12:w 220 113 0.1317 0.1455 0.2832 0.39 7b12:i
19 1v9l:A 418 96 0.1111 0.0646 0.2812 0.39 1v9l:B, 1v9l:C, 1v9l:D, 1v9l:E, 1v9l:F
20 6tfb:A 128 39 0.0576 0.1094 0.3590 1.7 4f0a:A, 6tfb:B
21 5ahj:Z 222 145 0.1276 0.1396 0.2138 1.9 3bdm:L, 3bdm:Z, 5bou:Z, 5bxl:Z, 5cgf:Z, 5cgg:Z, 5cgh:Z, 5cgi:Z, 5cz4:Z, 5cz5:L, 5cz5:Z, 5cz6:Z, 5cz7:Z, 5cz8:Z, 5cz9:L, 5cz9:Z, 5cza:Z, 5d0s:L, 5d0s:Z, 5d0t:Z, 5d0v:Z, 5d0w:Z, 5d0x:Z, 5d0z:L, 5d0z:Z, 3d29:L, 3d29:Z, 5dki:Z, 5dkj:Z, 5fg7:Z, 5fg9:Z, 5fga:Z, 5fgd:Z, 5fge:Z, 5fgf:Z, 5fgg:L, 5fgg:Z, 5fgh:Z, 5fgi:L, 5fgi:Z, 5fhs:L, 5fhs:Z, 1fnt:a, 9fst:Z, 9fsv:Z, 9ft1:L, 9ft1:Z, 4fzc:L, 4fzc:Z, 4fzg:L, 4fzg:Z, 1g0u:L, 1g0u:Z, 4g4s:M, 1g65:L, 1g65:Z, 6g7f:Z, 6g8m:Z, 6g8n:Z, 4gk7:L, 4gk7:Z, 6gop:Z, 6h39:L, 6h39:Z, 4hrc:L, 6htc:Z, 6htr:L, 6htr:Z, 6hub:Z, 6huq:L, 6huu:L, 6huu:Z, 6huv:Z, 6hv3:Z, 6hv4:Z, 6hv7:Z, 6hva:L, 6hva:Z, 6hvr:Z, 6hvs:L, 6hvs:Z, 6hvt:L, 6hvt:Z, 6hvu:L, 6hvu:Z, 6hvv:Z, 6hvx:Z, 6hvy:Z, 6hw0:Z, 6hw3:L, 6hw3:Z, 6hw4:Z, 6hw5:Z, 6hw6:L, 6hw6:Z, 6hw7:L, 6hw7:Z, 6hw8:Z, 6hw9:Z, 6hwa:Z, 6hwb:L, 6hwb:Z, 6hwc:Z, 6hwd:Z, 6hwe:L, 6hwe:Z, 6hwf:Z, 4inr:Z, 4int:Z, 4inu:L, 4inu:Z, 1jd2:L, 5jhr:L, 5jhr:Z, 5jhs:Z, 4jsq:L, 4jsq:Z, 4jsu:L, 4jsu:Z, 4jt0:L, 4jt0:Z, 5l52:L, 5l52:Z, 5l54:Z, 5l55:L, 5l55:Z, 5l5a:Z, 5l5b:Z, 5l5d:Z, 5l5e:Z, 5l5f:Z, 5l5h:Z, 5l5i:L, 5l5i:Z, 5l5j:Z, 5l5o:L, 5l5o:Z, 5l5p:Z, 5l5q:Z, 5l5r:Z, 5l5s:Z, 5l5t:L, 5l5t:Z, 5l5u:L, 5l5u:Z, 5l5v:L, 5l5v:Z, 5l5w:Z, 5l5x:Z, 5l5y:L, 5l5y:Z, 5l5z:Z, 5l60:L, 5l60:Z, 5l61:Z, 5l62:Z, 5l63:L, 5l63:Z, 5l64:L, 5l64:Z, 5l66:Z, 5l67:L, 5l67:Z, 5l68:Z, 5l69:L, 5l69:Z, 5l6a:Z, 5l6b:Z, 5l6c:L, 5l6c:Z, 5lai:Z, 5laj:Z, 5ltt:Z, 5m2b:L, 5m2b:Z, 3mg4:L, 3mg4:Z, 3mg6:L, 3mg6:Z, 3mg7:L, 3mg7:Z, 3mg8:L, 3mg8:Z, 4nnn:Z, 4nnw:Z, 4no1:Z, 4no6:L, 4no6:Z, 4no8:Z, 4no9:Z, 3nzj:L, 3nzj:Z, 3nzw:L, 3nzw:Z, 3nzx:L, 3nzx:Z, 7o2l:Z, 3oeu:L, 3oeu:Z, 3oev:L, 3oev:Z, 8ohz:L, 8ohz:Z, 8oi1:L, 8oi1:Z, 3okj:L, 3okj:Z, 8olr:Z, 4qby:Z, 4qlq:Z, 4qls:L, 4qls:Z, 4qlt:L, 4qlt:Z, 4qlu:L, 4qlv:L, 4qlv:Z, 4qux:Z, 4quy:Z, 4qv1:Z, 4qv3:Z, 4qv6:Z, 4qv7:Z, 4qv8:Z, 4qv9:Z, 4qvl:Z, 4qvm:Z, 4qvn:Z, 4qvp:Z, 4qvq:Z, 4qvw:Z, 4qvy:Z, 4qw1:Z, 4qw3:Z, 4qw4:L, 4qw4:Z, 4qw5:L, 4qw5:Z, 4qw6:L, 4qw6:Z, 4qw7:L, 4qw7:Z, 4qwf:L, 4qwf:Z, 4qwg:L, 4qwg:Z, 4qwi:L, 4qwi:Z, 4qwj:L, 4qwj:Z, 4qwk:L, 4qwk:Z, 4qwl:L, 4qwl:Z, 4qwr:L, 4qwr:Z, 4qws:L, 4qws:Z, 4qwu:Z, 4qwx:Z, 4qz0:Z, 4qz2:Z, 4qz3:Z, 4qz4:Z, 4qz5:Z, 4qz6:Z, 4qz7:Z, 4qzw:Z, 4qzx:Z, 4qzz:Z, 4r02:L, 4r02:Z, 4r17:Z, 4r18:Z, 8rhj:L, 8rhj:Z, 8rhk:L, 8rhk:Z, 8rhl:L, 8rhl:Z, 4rur:L, 4rur:Z, 1ryp:M, 1ryp:1, 3sdi:L, 3sdi:Z, 3sdk:L, 3sdk:Z, 3shj:L, 3shj:Z, 3un4:L, 3un4:Z, 4y69:Z, 4y6a:Z, 4y6v:Z, 4y6z:Z, 4y70:Z, 4y74:Z, 4y75:Z, 4y77:Z, 4y7x:Z, 4y7y:Z, 4y80:Z, 4y81:Z, 4y82:Z, 4y84:Z, 4y8g:Z, 4y8h:Z, 4y8i:Z, 4y8j:Z, 4y8k:Z, 4y8l:Z, 4y8m:Z, 4y8n:Z, 4y8o:Z, 4y8p:Z, 4y8q:Z, 4y8r:Z, 4y8t:Z, 4y8u:Z, 4y9y:Z, 4ya0:Z, 4ya1:Z, 4ya3:Z, 4ya4:Z, 4ya5:Z, 4z1l:Z, 6zou:L, 6zou:Z, 6zp6:L, 6zp6:Z, 6zp8:L, 6zp8:Z
22 8x6f:D 1176 35 0.0576 0.0119 0.4000 3.0 8x6g:D
23 8jun:A 678 34 0.0494 0.0177 0.3529 4.0 8jun:B
24 8woq:A 647 34 0.0494 0.0185 0.3529 4.3 8j6m:B, 8j6m:A, 8jul:A, 8jul:B, 8kcw:A, 8kcw:C, 8woq:B, 8wor:A, 8wor:B, 8wos:A, 8wos:B, 8wot:A, 8wot:B
25 8fia:A 1772 79 0.0823 0.0113 0.2532 4.5
26 5ury:A 119 36 0.0535 0.1092 0.3611 4.9 5urz:A
27 2d3t:C 390 61 0.0617 0.0385 0.2459 5.1 2d3t:D, 1wdk:C, 1wdk:D, 1wdl:C, 1wdl:D, 1wdm:C, 1wdm:D
28 2iuf:A 688 89 0.0741 0.0262 0.2022 6.3 2iuf:E, 2xf2:A, 2xf2:E
29 1gl9:B 1020 41 0.0576 0.0137 0.3415 6.4 1gl9:C
30 4r90:H 224 64 0.0823 0.0893 0.3125 6.6
31 4da2:A 231 79 0.0823 0.0866 0.2532 7.4 4da2:B, 4dav:A, 4dav:B
32 4hap:A 431 35 0.0700 0.0394 0.4857 7.9 4hap:B, 4haq:A, 4haq:B, 4ipm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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