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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGWSLSVGIIMCLCNVFAFVIGYFAGLPELLATMSFGHILGAGMVLGLASSGI

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4kt0:K 53 53 1.0000 1.0000 1.0000 3.36e-31
2 4l6v:K 80 74 1.0000 0.6625 0.7162 3.87e-27 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
3 7fix:K1 79 71 0.5660 0.3797 0.4225 2.36e-11 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
4 6tcl:K 60 51 0.5283 0.4667 0.5490 3.38e-11 6tcl:KK
5 6vpv:K 78 69 0.5472 0.3718 0.4203 2.17e-10 6vpv:k, 6vpv:9
6 6kmx:aK 46 46 0.4906 0.5652 0.5652 3.49e-10 6kmx:bK, 6kmx:cK
7 8wm6:K 69 62 0.4717 0.3623 0.4032 7.95e-09 8wmj:K, 8wmv:K, 8wmw:K
8 7m75:K 47 46 0.4717 0.5319 0.5435 1.12e-08 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
9 6k61:k 78 69 0.5660 0.3846 0.4348 1.33e-08 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
10 6kif:K 78 69 0.5283 0.3590 0.4058 1.52e-08 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
11 7y5e:KN 70 60 0.4906 0.3714 0.4333 2.45e-08 7y5e:K2, 7y7a:K7, 7y7a:Ko
12 8wey:K 63 61 0.4340 0.3651 0.3770 4.50e-07
13 8asp:k 77 70 0.4906 0.3377 0.3714 2.23e-06 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
14 7y7b:K 78 72 0.4717 0.3205 0.3472 2.68e-06 7y8a:K
15 5zgb:K 59 52 0.3774 0.3390 0.3846 2.96e-06 7blz:K, 6fos:K, 5zgh:K
16 7s3d:K 75 67 0.4340 0.3067 0.3433 8.90e-04 7s3d:T, 7s3d:k
17 8bcv:K 88 27 0.2830 0.1705 0.5556 0.022 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
18 7a4p:K 86 24 0.2642 0.1628 0.5833 0.091 6zzx:K, 6zzy:K
19 6igz:K 80 23 0.2264 0.1500 0.5217 0.35
20 7qco:K 65 25 0.2264 0.1846 0.4800 0.38 7qco:R, 7qco:r, 7qco:k
21 7dr2:aK 69 20 0.1887 0.1449 0.5000 0.83 7dr0:K, 7dr2:cK
22 8j7a:K 56 50 0.3208 0.3036 0.3400 1.00
23 7coy:aK 33 36 0.2642 0.4242 0.3889 1.1 7coy:bK, 7coy:cK
24 4y28:K 57 24 0.2264 0.2105 0.5000 1.1
25 7wfd:AK 65 26 0.2453 0.2000 0.5000 1.3 7wfe:BK, 7wg5:AK, 7wg5:BK
26 8wgh:K 83 24 0.2453 0.1566 0.5417 1.3
27 8j6z:K 84 26 0.2453 0.1548 0.5000 1.6 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
28 3p5n:A 168 28 0.2075 0.0655 0.3929 2.4 3p5n:B
29 8cmo:K 89 24 0.2264 0.1348 0.5000 2.5
30 3q1o:A 303 37 0.2264 0.0396 0.3243 2.9 3q1o:B, 3q1o:C, 3q1o:D
31 8htu:K 81 23 0.1887 0.1235 0.4348 5.6 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
32 5kp7:A 410 25 0.1887 0.0244 0.4000 7.7 5kp8:A
33 7mgq:A 602 34 0.2830 0.0249 0.4412 8.0 7mgq:B, 7mgq:C, 7mgq:D
34 4ce0:A 213 26 0.1509 0.0376 0.3077 8.3 4cdz:A
35 4xk8:k 46 22 0.2264 0.2609 0.5455 9.4 4xk8:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218