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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AGTVMDHDKIAKLPASGSPLETKFQPQLHIGNGCHSYPAVDAQGNWSGGLKPTGAPSAACKDTSKAQTYVRSATFQGKTA
LVYAWYMPKDEISTGIGHRHDWEGAVVFLNSDTQQIDGVAASAHGKWRKYPNPGGANIDDTHVKLQYSAEPVINSHALDL
TDKGGDLPTLASWEGMGADARAAINERSHWGDANPPIADSLIGSSLSGAWMW

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3st1:A 212 212 1.0000 1.0000 1.0000 2.69e-158
2 5no9:B 212 204 0.4151 0.4151 0.4314 2.07e-47 3gnz:P, 5nnw:A, 5nnw:B, 5nnw:C, 5nnw:D, 5no9:A, 5no9:C, 5no9:D, 6qbd:A, 6qbd:B
3 8dgc:A 2028 43 0.0849 0.0089 0.4186 0.30 8dgc:B, 8dgc:C, 8dgc:D
4 6cer:D 331 55 0.0755 0.0483 0.2909 0.90 6cer:B, 6cer:H, 6cer:F, 6cfo:D, 6cfo:B, 3exe:D, 3exe:B, 3exe:H, 3exe:F, 3exf:D, 3exf:B, 3exf:H, 3exf:F, 3exh:D, 3exh:B, 3exh:H, 3exh:F, 1ni4:D, 1ni4:B, 2ozl:D, 2ozl:B
5 7f4v:aB 725 84 0.1085 0.0317 0.2738 2.5 7f4v:bB, 7f4v:cB
6 1pyt:B 309 24 0.0519 0.0356 0.4583 9.8 2abz:A, 2abz:B, 1arm:A, 1bav:A, 1bav:B, 1bav:C, 1bav:D, 1cbx:A, 1cps:A, 1cpx:A, 3cpa:A, 4cpa:A, 4cpa:B, 5cpa:A, 6cpa:A, 7cpa:A, 8cpa:A, 2ctb:A, 2ctc:A, 1ee3:P, 1ell:P, 1elm:P, 1f57:A, 3fvl:A, 3fvl:C, 3fvl:E, 3fx6:A, 3fx6:C, 3fx6:E, 1hdq:A, 1hdu:A, 1hdu:B, 1hdu:D, 1hdu:E, 1hee:A, 1hee:B, 1hee:D, 1hee:E, 3hlp:A, 3hlp:B, 3huv:A, 3i1u:A, 1iy7:A, 3kgq:A, 1m4l:A, 2rfh:A, 1yme:A, 1zlh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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