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BioLiP
>protein
AGTDTGESTATSIQTWLSTWIPIGCAIAIMVSCFMWMLHVIPASFIPRIVISLIGIGSASYLVSLTGVGS

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8cw4:1B 70 70 1.0000 1.0000 1.0000 3.22e-44 8cw4:2A, 8cw4:2B, 8cw4:1C, 8cw4:2C, 8cw4:1D, 8cw4:1E, 8cw4:2D, 8cw4:1F, 8cw4:2E, 8cw4:2F, 8cw4:1G, 8cw4:2G, 8cw4:1H, 8cw4:2H, 8cw4:1I, 8cw4:2I, 8cw4:1J, 8cw4:2J, 8cw4:1K, 8cw4:2K, 8cw4:1L, 8cw4:2L, 8cw4:1M, 8cw4:1N, 8cw4:2M, 8cw4:2N, 8cw4:3A, 8cw4:3B, 8cw4:3C, 8cw4:3D, 8cw4:3E, 8cw4:3F, 8cw4:3G, 8cw4:3H, 8cw4:3I, 8cw4:3J, 8cw4:3K, 8cw4:3L, 8cw4:3M, 8cw4:3N, 8cw4:4A, 8cw4:4B, 8cw4:4C, 8cw4:4D, 8cw4:4E, 8cw4:4F, 8cw4:4G, 8cw4:4H, 8cw4:4I, 8cw4:4J, 8cw4:4K, 8cw4:4L, 8cw4:4M, 8cw4:4N, 8cw4:5A, 8cw4:5B, 8cw4:5C, 8cw4:5D, 8cw4:5E, 8cw4:5F, 8cw4:5G, 8cw4:5H, 8cw4:5I, 8cw4:5J, 8cw4:5K, 8cw4:5L, 8cw4:5M, 8cw4:5N, 8cw4:1A
2 9fjc:1 223 61 0.2429 0.0762 0.2787 0.65
3 1mqt:A 271 61 0.2429 0.0627 0.2787 0.66
4 6zck:A 271 62 0.2571 0.0664 0.2903 1.9
5 6kif:I 38 23 0.1429 0.2632 0.4348 3.3 6kif:S, 6kif:k, 6kig:I, 6kig:S, 6kig:k
6 6py3:B 238 15 0.1429 0.0420 0.6667 7.0 6pxy:A, 6py3:A, 6py4:A, 6py5:A, 6pyi:A, 6q0f:A, 6q0g:A
7 7ry3:C 1048 25 0.1000 0.0067 0.2800 9.6 7m4p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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