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BioLiP
>protein
AGSRLETVGSIFSRTRDLVRAGVLKEKPLWFDVYDAFPPLREPVFQRPRVRYGKAKAPIQDIWYHEDRIRAKFYSVYGSG
QRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLFVETGKALLA

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8any:AS 135 126 1.0000 0.9333 1.0000 2.56e-91 7a5f:S6, 7a5g:S6, 7a5i:S6, 7a5k:S6, 8csp:S, 8csq:S, 8csr:S, 8css:S, 8cst:S, 8csu:S, 3j9m:AS, 8k2a:SY, 7l08:AS, 6nu2:AS, 6nu3:AS, 7og4:AS, 8oir:AS, 8ois:AS, 7p2e:S, 7pnx:S, 7pny:S, 7pnz:S, 7po0:S, 7po1:S, 7po2:S, 7po3:S, 7qi4:AS, 7qi5:AS, 7qi6:AS, 8qrk:S, 8qrl:S, 8qrm:S, 8qrn:S, 6rw4:S, 6rw5:S, 6vlz:AS, 6vmi:AS, 8xt0:SY, 8xt2:SY, 6zm5:AS, 6zm6:AS, 6zs9:AS, 6zsa:AS, 6zsb:AS, 6zsc:AS, 6zsd:AS, 6zse:AS, 6zsg:AS
2 5aj3:b 135 126 0.8810 0.8222 0.8810 8.83e-82 5aj4:Ab, 6gaw:Ab, 6gaz:Ab, 3jd5:b, 6neq:b, 6nf8:b, 7nqh:Ab, 7nql:Ab, 7nsi:Ab, 7nsj:Ab, 8oin:AS, 8oip:AS, 6ydp:Ab, 6ydw:Ab
3 7pnt:S 136 126 0.8730 0.8088 0.8730 6.16e-81 7pnu:S, 7pnv:S, 7pnw:S
4 8om2:U 237 43 0.1270 0.0675 0.3721 3.06e-04 8d8k:U, 8d8l:U, 5mrc:UU, 5mre:UU, 5mrf:UU, 8om3:U, 8om4:U
5 6xyw:Bu 100 73 0.2063 0.2600 0.3562 0.003
6 7ufg:A 1151 39 0.1190 0.0130 0.3846 0.087
7 7ufg:B 1182 39 0.1190 0.0127 0.3846 0.087 8d8o:B
8 8a7e:C 1524 39 0.1190 0.0098 0.3846 0.088 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
9 6gaq:A 146 62 0.1429 0.1233 0.2903 0.22 6gaq:B
10 5lji:A 145 125 0.2540 0.2207 0.2560 1.8 5lji:C
11 6yxx:E3 403 31 0.1032 0.0323 0.4194 3.8
12 3fwr:B 146 26 0.1032 0.0890 0.5000 4.6 3fwr:A, 3fws:A, 3fws:B
13 7aor:p 242 89 0.1587 0.0826 0.2247 4.7
14 5u6n:B 448 114 0.2222 0.0625 0.2456 4.9 5u6m:A, 5u6m:B, 5u6n:A, 5u6s:A, 5u6s:B, 5v2j:A, 5v2j:B, 5v2k:A, 5v2k:B
15 6joo:A 834 52 0.1349 0.0204 0.3269 5.4
16 7ou8:AAA 714 36 0.1349 0.0238 0.4722 7.5 5abe:A, 5abe:B, 5abf:A, 5abf:B, 5abg:A, 5abg:B, 5abh:A, 5abh:B, 4ais:A, 4ais:B, 4aiu:A, 2chn:A, 2chn:B, 2cho:A, 2cho:B, 5fky:A, 5fky:B, 5fl0:A, 5fl0:B, 5fl1:A, 5fl1:B, 2j47:A, 2j4g:A, 2j4g:B, 2jiw:A, 2jiw:B, 7k41:A, 5mi4:A, 5mi5:A, 5mi6:A, 5mi7:A, 7ou8:BBB, 4ur9:A, 4ur9:B, 2vvn:A, 2vvn:B, 2vvs:A, 2w4x:A, 2w66:A, 2w66:B, 2w67:A, 2w67:B, 2wca:A, 2wzh:A, 2wzi:A, 2wzi:B, 2x0h:A, 2x0h:B, 2xj7:A, 2xj7:B, 2xm1:A, 2xm1:B, 2xm2:A, 2xm2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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