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BioLiP
>protein
AGSRLETVGSIFSRTRDLIRAGVLKEKPLWLDIYNAFPPLREPVFRRPRLRYGKAKAAVQDIFYHEDRIRAKFYSAYGSG
PKAFDLFNPNFKSTCQRFVEKYIELQRLGETDEEKLFVEAGKALLAEGVTLRRVG

The query sequence (length=135) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5aj3:b 135 135 1.0000 1.0000 1.0000 7.15e-97 5aj4:Ab, 6gaw:Ab, 6gaz:Ab, 3jd5:b, 6neq:b, 6nf8:b, 7nqh:Ab, 7nql:Ab, 7nsi:Ab, 7nsj:Ab, 8oin:AS, 8oip:AS, 6ydp:Ab, 6ydw:Ab
2 8any:AS 135 135 0.8815 0.8815 0.8815 2.29e-87 7a5f:S6, 7a5g:S6, 7a5i:S6, 7a5k:S6, 8csp:S, 8csq:S, 8csr:S, 8css:S, 8cst:S, 8csu:S, 3j9m:AS, 8k2a:SY, 7l08:AS, 6nu2:AS, 6nu3:AS, 7og4:AS, 8oir:AS, 8ois:AS, 7p2e:S, 7pnx:S, 7pny:S, 7pnz:S, 7po0:S, 7po1:S, 7po2:S, 7po3:S, 7qi4:AS, 7qi5:AS, 7qi6:AS, 8qrk:S, 8qrl:S, 8qrm:S, 8qrn:S, 6rw4:S, 6rw5:S, 6vlz:AS, 6vmi:AS, 8xt0:SY, 8xt2:SY, 6zm5:AS, 6zm6:AS, 6zs9:AS, 6zsa:AS, 6zsb:AS, 6zsc:AS, 6zsd:AS, 6zse:AS, 6zsg:AS
3 7pnt:S 136 134 0.8667 0.8603 0.8731 5.22e-85 7pnu:S, 7pnv:S, 7pnw:S
4 8om2:U 237 43 0.1111 0.0633 0.3488 0.001 8d8k:U, 8d8l:U, 5mrc:UU, 5mre:UU, 5mrf:UU, 8om3:U, 8om4:U
5 6xyw:Bu 100 69 0.1630 0.2200 0.3188 0.017
6 7ufg:A 1151 39 0.1111 0.0130 0.3846 0.18
7 7ufg:B 1182 39 0.1111 0.0127 0.3846 0.18 8d8o:B
8 8a7e:C 1524 39 0.1111 0.0098 0.3846 0.19 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
9 5xyi:T 146 104 0.2074 0.1918 0.2692 0.25
10 7fd2:B 419 69 0.1407 0.0453 0.2754 2.3 7fd2:F, 7fd2:J, 7fd2:N, 7vga:B, 7vga:E, 7vga:H, 7vga:K, 7wco:K
11 2qtt:A 248 75 0.1407 0.0766 0.2533 3.9 2h8g:A, 2h8g:B, 3lgs:A, 3lgs:B, 3lgs:C, 3lgs:D, 2qtg:A, 2qtg:B, 2qtt:B
12 3fwr:B 146 65 0.1407 0.1301 0.2923 6.6 3fwr:A, 3fws:A, 3fws:B
13 2d0f:A 637 45 0.1037 0.0220 0.3111 7.6 2d0g:A, 2d0h:A, 1izj:A, 1izk:A, 1ji1:A, 1ji1:B, 1uh2:A, 1uh3:A, 1uh4:A, 5z0t:A, 5z0t:B, 5z0u:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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